jackbibby1/SCPA

Issues

• parallel compute error

  #86 opened 9 days ago by Goultard59
  1

• Error during running infer_trajectory(): unable to find an inherited method for function 'reducedDim'

  #85 opened a month ago by anuragraj
  2

• ERROR: dependency ‘multicross’ is not available for package ‘SCPA’

  #84 opened a month ago by monisha1202
  4

• Issue running "compare_pathways" in SCPA

  #83 opened 2 months ago by ginamcneill
  4

• FC calculation in compare_pathways()

  #81 opened 3 months ago by neogilab
  3

• Trying to retrive the genes that are being used for each pathway in SCPA compare_pathways

  #82 opened 3 months ago by yowe21
  2

• Must be even number of elements/adding ghost value error

  #78 opened 5 months ago by hbussan
  8

• error x$Genes: $ operator is invalid for atomic vectors

  #76 opened 5 months ago by INeedCNS
  1

• Extracting genes from scpa ouput

  #74 opened 5 months ago by cdkodira
  1

• Odd result in pseudotime

  #73 opened 5 months ago by Umaarasu
  6

• Error reproducing step in "Systems level tissue comparison" tutorial

  #80 opened 5 months ago by JonasDBM
  2

• Interpreting and reporting significant Qvalues

  #77 opened 6 months ago by MAGBP
  2

• Error installing SCPA

  #75 opened 7 months ago by nikolasgiannak
  6

• compare_seurat AND extract_seurat give error

  #72 opened 7 months ago by francescopatane96
  7

• Error when installing: package 'multicross' is not available

  #71 opened 8 months ago by r-melo
  2

• installation of SCPA fails, because 'crossmatch' is unavailable.

  #70 opened 8 months ago by MelanieRN
  5

• Error in dplyr::arrange, object 'qval' not found while comparing two seurat objects

  #61 opened 9 months ago by Hainajin
  14

• error in evaluating the argument 'mdm' in selecting a method for function 'nonbimatch'

  #69 opened 9 months ago by BenJCQuah
  9

• Invalid size argument when comparing spots in Visium data

  #68 opened 10 months ago by r-melo
  5

• Error in as.matrix(Seurat::GetAssay(seu_obj, assay)@data) : no slot of name "data" for this object of class "Assay5"

  #67 opened 10 months ago by tumorscholar
  11

• Multicross no longer valid for New R Versions

  #66 opened a year ago by JyoRoy21
  3

• Installation failed

  #64 opened a year ago by ryshi06
  1

• Input Data

  #65 opened a year ago by AlexisFon
  1

• Two questions...

  #63 opened a year ago by hsiowa2
  4

• Error in install

  #62 opened a year ago by Nessetti
  2

• Cannot run load the SCPA library

  #58 opened a year ago by LilianGomes
  7

• Cannot install SCPA Successfully

  #59 opened a year ago by shamer3
  3

• Issue with "homemade" .csv file

  #60 opened a year ago by AlexisFon
  10

• Output with many identical Qvalues and many NAs for FC

  #52 opened a year ago by troks27
  5

• how to query other GSEA databases (for mouse)

  #57 opened a year ago by BartBryant
  7

• SCT vs RNA assay with a Seurat Object

  #53 opened a year ago by troks27
  1

• SCPA comparsion (seurat object)

  #55 opened a year ago by BartBryant
  6

• Error install SCPA on R 4.3.1

  #56 opened a year ago by camilla0801
  2

• can't install SCPA package

  #54 opened a year ago by BartBryant
  3

• Pseudobulking

  #47 opened a year ago by Nusob888
  2

• Define pathways and run comparison

  #46 opened a year ago by shamer3
  8

• Threshold QVal

  #51 opened 2 years ago by je71xusa
  2

• combined_metabolic_pathways.csv

  #50 opened 2 years ago by Yuvalyos
  4

• Package Installation Issues

  #44 opened 2 years ago by shamer3
  3

• Pathway expression

  #49 opened 2 years ago by rvalieris
  2

• Error in utils::download SCPA

  #43 opened 2 years ago by deepdiver25
  5

• Issues getting any packages to install

  #45 opened 2 years ago by shamer3
  3

• Get genes associated with pathway terms

  #38 opened 2 years ago by ayeTown
  12

• combined_metabolic_pathways. csv for mice?

  #37 opened 2 years ago by liyan910117
  1

• SCPA for Spatial Visium Data

  #28 opened 2 years ago by cathalgking
  4

• speed up computation with parallel and multi-cores

  #36 opened 2 years ago by quyaingo
  4

• downsample in compare_seurat

  #34 opened 2 years ago by quyaingo
  6

• Analysis across multiple experiments

  #33 opened 2 years ago by deniando
  2

• when i installed the packages, it always failed😭

  #30 opened 2 years ago by yinguoli0103
  3

• Interpreting the SCPA output

  #27 opened 2 years ago by min0609
  3