jbh-cas

Pinned Repositories

• Juicebox

  Visualization and analysis software for Hi-C data -

  Language:Java2442382458

• assembly_etc

  Language:Shell1300

• bioawk.CAS

  extensions to heng li's bioawk

  Language:C0500

• ccgutils

  utilties in various languages used in one or more projects

  Language:Python0622

• minibar

  Dual barcode and primer demultiplexing for MinION sequenced reads

  Language:Python355135

• PythonLife

  Language:Jupyter Notebook2700

• hifiasm

  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

  Language:C++5402965987

• BRAKER

  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

  Language:Perl3612280681

• compleasm

  A genome completeness evaluation tool based on miniprot

  Language:Python17753617

• verkko

  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

  Language:Python3001828329

jbh-cas's Repositories