jdeligt

jdeligt's Stars

• lh3/minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.8k861.1k406

• yihui/xaringan

  Presentation Ninja 幻灯忍者 · 写轮眼

  Language:CSS1.5k66276281

• pangenome/pggb

  the pangenome graph builder

  Language:Shell3601316639

• wwood/CoverM

  Read coverage calculator for metagenomics

  Language:Rust2971116130

• DaehwanKimLab/centrifuge

  Classifier for metagenomic sequences

  Language:C++2461426973

• pangenome/odgi

  Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

  Language:C++1911414539

• opencb/opencga

  An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Please contact support@zettagenomics.com for bug report and feature requests.

  Language:Java166301.5k97

• Clinical-Genomics/scout

  VCF visualization interface

  Language:HTML150152.6k46

• Psy-Fer/SquiggleKit

  SquiggleKit: A toolkit for manipulating nanopore signal data

  Language:Python122135823

• bioinfomaticsCSU/deepsignal

  Detecting methylation using signal-level features from Nanopore sequencing reads

  Language:Python10838521

• sirselim/jetson_nanopore_sequencing

  A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

  10792512

• epi2me-labs/wf-human-variation

  Language:Nextflow951421842

• Clinical-Genomics/genmod

  Annotate models of genetic inheritance patterns in variant files (vcf files)

  Language:Python7499618

• isovic/raptor

  Graph-based mapping of long sequences, noisy or HiFi.

  Language:Perl54912

• GenomicsAotearoa/metagenomics_summer_school

  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber

  Language:HTML52104230

• nf-core/oncoanalyser

  A comprehensive cancer DNA/RNA analysis and reporting pipeline

  Language:Nextflow40171326

• arnederoeck/NanoSatellite

  Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.

  Language:R314121

• ESR-NZ/human_genomics_pipeline

  A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

  Language:Python304321

• opencb/iva

  Generic Interactive Variant Analysis browser

  Language:JavaScript291414118

• hsnguyen/assembly

  Streaming assembly for MinION data

  Language:Java25414

• eleybourn/presentation_karaoke

  1 minute, random topic, random slides --- GO!

  Language:JavaScript242021

• EBI-Metagenomics/pipeline-v5

  This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

  Language:HTML2171419

• NCI-GDC/gdc-dnaseq-cwl

  CWL for GDC DNASeq workflows

  Language:Common Workflow Language2021014

• pha4ge/hAMRonization_workflow

  Harmonization of AMR predictor tool outputs

  Language:Python2010138

• OHDSI/Genomic-CDM

  Repository for development of the genomic module of the CDM.

  191966

• crohrandt/nanopore_simulation

  Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.

  Language:Python18463

• PharmGKB/ITPC

  Code for processing data collected by the International Tamoxifen Pharmacogenomics Consortium

  Language:Java131603

• pubseq/bh20-seq-resource

  Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis

  Language:Python1386124

• leahkemp/documentation

  Documentation for various ESR projects.

  Language:HTML2201

• Print-Group-Repository/analysis-workflows

  Open workflow definitions for genomic analysis from MGI at WUSM.

  Language:Common Workflow Language11