jeanne-quinn

jeanne-quinn's Stars

• google-deepmind/alphafold

  Open source code for AlphaFold 2.

  Language:Python13.1k2288722.3k

• sokrypton/ColabFold

  Making Protein folding accessible to all!

  Language:Jupyter Notebook2.1k48567509

• CellProfiler/CellProfiler

  An open-source application for biological image analysis

  Language:Python938463.3k384

• stefmolin/Hands-On-Data-Analysis-with-Pandas-2nd-edition

  Materials for following along with Hands-On Data Analysis with Pandas – Second Edition

  Language:Jupyter Notebook59823371.4k

• stefmolin/Hands-On-Data-Analysis-with-Pandas

  Materials for following along with Hands-On Data Analysis with Pandas.

  Language:Jupyter Notebook411198814

• pablo-arantes/making-it-rain

  Cloud-based molecular simulations for everyone

  Language:Rich Text Format40417123112

• stefmolin/pandas-workshop

  An introductory workshop on pandas with notebooks and exercises for following along. Slides contain all solutions.

  Language:Jupyter Notebook36672739

• pwwang/datar

  A Grammar of Data Manipulation in python

  Language:Python2781112418

• has2k1/plydata

  A grammar for data manipulation in Python

  Language:Python276182911

• OpenPIV/openpiv-python

  OpenPIV is an open source Particle Image Velocimetry analysis software written in Python and Cython

  Language:Jupyter Notebook25227111147

• clEsperanto/pyclesperanto_prototype

  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data

  Language:Jupyter Notebook2171414146

• CellProfiler/CellProfiler-Analyst

  Open-source software for exploring and analyzing large, high-dimensional image-derived data.

  Language:Python1492128973

• cytomining/DeepProfiler

  Morphological profiling using deep learning

  Language:Python1101222540

• CellProfiler/CellProfiler-plugins

  Community-contributed and experimental CellProfiler modules.

  Language:Python611010068

• nuitrcs/pythonworkshops

  Materials for Python workshops

  Language:CSS459021

• MontpellierRessourcesImagerie/imagej_macros_and_scripts

  ImageJ macros and scripts written at the imaging facility MRI

  Language:Jupyter Notebook32101616

• chongjason914/pandas-tutorial

  Beginner's introduction to the pandas library for data manipulation

  Language:Jupyter Notebook251014

• tferr/Scripts

  :microscope::cocktail: Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

  Language:Java2462018

• suneelpatel/Data-Analysis-using-Python

  Learn to analyze data with Python. Here you will learn, Import data sets, Clean and prepare data for analysis, Manipulate pandas DataFrame, Summarize data, Build machine learning models using scikit-learn, Build data pipelines.

  Language:Jupyter Notebook232013

• biocompibens/SME

  Smooth 2D manifold extraction from 3D image stack

  Language:Java219123

• CellProfiler/examples

  Example CellProfiler pipelines.

  Language:Makefile1271714

• davidmashburn/SeedWaterSegmenter

  Graphical Python program to interactively segment image stacks of cells in tissue

  Language:Python10634

• sverger/SurfCut

  Fiji macro for cutting confocal stacks at various depths relative to surface signal

  10037

• idrblab/MoDAFold

  an innovative strategy for missense mutant protein structures prediction based on AlphaFold2 and Molecular Dynamics Simulation

  Language:Shell9012

• ImperialCollegeLondon/Junction_Mapper

  Java desktop client software for analysing biological images of cell junctions

  Language:Java5311

• IPritisanac/AF2.IDR

  Code and data for "Systematic identification of conditionally folded intrinsically disordered regions by AlphaFold2"

  Language:Python5101

• DaleMoulding/Fiji-Macros

  Published Macros for image analysis & utilities for scalebars (ICH microscopes) & automating standard tasks. All are covered under an MIT License, so can be freely used and distributed.

  Language:ImageJ Macro3110

• epitools/epitools-matlab

  EpiTools image processing toolkit for MATLAB

  Language:MATLAB3324

• Bergstralh-Lab/ALAn

  ALAn: Automated Layer Analysis. An unbiased tool for the quantification of mammalian epithelial cell architecture.

  Language:Jupyter Notebook1102

• Marien-kaefer/ROI-intensities

  extract channel, generate ROIs from segmentation and measure channel intensities

  1000