jgx65/hierfstat

Issues

• Negative kinship values with beta.dosage?

  #73 opened 5 months ago by alexkrohn
  3

• no issue. Structure output is correct, two rows/individual.

  #72 opened 6 months ago by iLAMtools
  1

• boot.ppfst

  #71 opened 7 months ago by Erikacj
  6

• plotting the kinship matrix and printing it

  #70 opened 9 months ago by alasousi85
  3

• NaN as result of basic.stats calculations for small populations

  #69 opened 9 months ago by JoulesOLVERA
  2

• Treatment of populations of 1

  #68 opened a year ago by sbreitbart
  10

• non-numeric argument error in boot.ppfis

  #67 opened a year ago by jaflury
  5

• Basic Stats (and Ho/Hs/Fis) Require Population Name to be Numeric With A Single Population

  #65 opened 2 years ago by alexkrohn
  4

• gstat.randtest missing

  #52 opened 3 years ago by osowiecki
  4

• pairwise.WCfst Error - non-conformable arrays

  #66 opened 2 years ago by silknets
  3

• How to Interpret Negative Fsts

  #64 opened 2 years ago by alexkrohn
  2

• NeiFST_calcuation_error

  #63 opened 2 years ago by laxmangene7
  2

• Fis calculations in basic.stats and boot.ppfis differ

  #62 opened 2 years ago by pygmyperch
  4

• boot.ppfst throwing an error with "diploid=F"

  #61 opened 2 years ago by lchall08
  4

• `basic.stats` Ho calculation is actually allele frequency

  #60 opened 2 years ago by eilishmcmaster
  4

• problem performing sex.biased.test() function

  #59 opened 2 years ago by danielsangarci
  3

• allelic.richness rounded numbers

  #58 opened 3 years ago by Gillous
  3

• pairwise.WCfst(genind2hierfstat(x)) and genet.dist(x, method = "WC84") do not yield the same result

  #57 opened 3 years ago by DaniEstevezBarcia
  8

• plot boot.ppfst

  #55 opened 3 years ago by andreiaamaral
  4

• Conversion genind to hierfstat df a little inconsistent

  #56 opened 3 years ago by courtiol
  2

• Calculating FST with Dosage and Missing Data

  #54 opened 3 years ago by alexkrohn
  5

• Parallelizing genet.dist() ?

  #53 opened 3 years ago by alexkrohn
  2

• Genet.dist not keeping population names

  #50 opened 3 years ago by jennagrimshaw
  3

• write.ped() removes first locus from hierfstat object

  #51 opened 3 years ago by DaniEstevezBarcia
  5

• estimated Fis value outside of bootstrapped CIs

  #49 opened 3 years ago by casparbein
  7

• write.struct documentation

  #46 opened 3 years ago by plantarum
  2

• Inconsistency in genet.dist function

  #48 opened 3 years ago by akamolphat
  3

• problem of pop.freq in pairwise.WCfst

  #47 opened 3 years ago by themrca
  2

• Cannot install package...

  #45 opened 4 years ago by dylanHco
  2

• explanation of behavior

  #44 opened 4 years ago by pdimens
  3

• getal seems to require ordered population labels

  #42 opened 4 years ago by falseflattortuga
  3

• boot.ppfst

  #43 opened 4 years ago by jwwhale
  6

• Bug in `getal`

  #24 opened 4 years ago by alephreish
  2

• Cannot calculate global Fst with confidence intervals

  #41 opened 4 years ago by TharinduTS
  6

• Impossible to find "fstat" function

  #40 opened 4 years ago by Vsonn
  2

• Request to update hierfstat to CRAN

  #29 opened 4 years ago by zkamvar
  7

• 2 funny problems when i use HierFstat

  #39 opened 4 years ago by zxy1555847
  1

• I can‘t find the example file（ “examplehier.txt”）

  #38 opened 4 years ago by zxy1555847
  1

• confidence intervals for average betas (pairwise FST)

  #37 opened 4 years ago by afontcub
  2

• betas.Rd

  #36 opened 4 years ago by yasfoster
  8

• Problems estimating observed heterozygosity

  #35 opened 4 years ago by EJFuchs
  1

• `getal.b` should determine `modulo` per column and not once for the whole dataset

  #33 opened 5 years ago by timflutre
  1

• pairwise.WCfst Error in 1:sum(data[, 1] == i) : NA/NaN argument

  #32 opened 5 years ago by piotyama
  2

• hierfstat::boot.ppfis function ‘+’ not meaningful for factors

  #31 opened 5 years ago by dani-davenport
  2

• Error because typo in fstat.from.adegenet.R header

  #30 opened 5 years ago by VitorAguiar
  1

• tests lead to g.star=0 on all permutations

  #28 opened 5 years ago by nehasavant
  8

• boot.ppfst requires pop to be numeric

  #27 opened 5 years ago by greavess
  5

• allelic.richness does not work for single-locus datasets

  #25 opened 6 years ago by nikostourvas
  1

• pairwise.neifst doesn't work if I use diploid=FALSE

  #26 opened 6 years ago by akang1414
  8

• Problem using hierfstat with genind object

  #23 opened 7 years ago by suzkel
  3