jhkorhonen/MOODS

Issues

• How to install this moudle on Windows?

  #48 opened 3 months ago by MrLiBowen
  0

• Remove -march=native from MOODS/python /setup.py?

  #47 opened a year ago by zia1138
  4

• TypeError specifically when using --best-hits

  #46 opened 2 years ago by plger
  0

• document difference between `threshold_from_p_with_precision` vs `threshold_from_p`

  #38 opened 3 years ago by alexlenail
  3

• moods-dna.py: Segmentation fault (core dumped) for long motifs

  #45 opened 2 years ago by osyafinkelberg
  2

• mood-score threshold choice for a given p-value and PWM is different across chromosomes

  #44 opened 2 years ago by osyafinkelberg
  4

• How could I add threads in `moods-dna.py` ?

  #42 opened 2 years ago by jiangpuxuan
  0

• No parse matrix with first order PWM with scoring

  #41 opened 2 years ago by cmandier
  0

• counts_max_hits function in Scanner class unavailable in MOODS 1.9.4.1

  #40 opened 2 years ago by rogadde
  1

• `--p-value 0.001` returns motif matches with negative scores

  #39 opened 3 years ago by alexlenail
  2

• Is there a way to write results to output file progressively

  #37 opened 3 years ago by alexlenail
  4

• `illegal hardware instruction`: Apple M1

  #36 opened 3 years ago by alexlenail
  1

• MOODS.search() deprecated? 1.9.4.1 locally installed via pip for python3.7

  #35 opened 3 years ago by kandabarau
  1

• Is this package still being maintained?

  #34 opened 3 years ago by laserson
  1

• Match Scores

  #12 opened 8 years ago by imk1
  9

• Windows installation

  #33 opened 4 years ago by denklewer
  1

• Cannot install on python 3.8.2

  #32 opened 4 years ago by gintarebucaite
  1

• MOODS 1.9.0- problem running example

  #5 opened 9 years ago by mazrooei
  6

• Migration path from v1.0.2.1 to v1.9.4.1

  #31 opened 4 years ago by michael-imbeault
  7

• [install,bug] setup.py contain files that are not in master branch

  #30 opened 5 years ago by shouldsee
  1

• Hit index in the reverse complement direction

  #29 opened 5 years ago by gencouchchu
  2

• How to we specify indels? Advertised functions do not exist?

  #25 opened 6 years ago by YichaoOU
  2

• installation MOODS-python-1.9.3

  #24 opened 5 years ago by RafaelMViana
  1

• PyPi package

  #14 opened 5 years ago by fabio-t
  13

• motif mapping not correct?

  #26 opened 6 years ago by YichaoOU
  6

• Does MOODS take into account multiple testing correction?

  #22 opened 6 years ago by doczmp
  2

• MOODS coredumps when motif file does not exist

  #23 opened 6 years ago by ghuls
  0

• Py3, Python extension? Where does the Python extension <count_log_odds> go?

  #21 opened 6 years ago by zhenyisong
  3

• P-value as score

  #18 opened 7 years ago by iamjli
  1

• install MOODS python extention module for python3

  #4 opened 6 years ago by joshuabhk
  4

• Problem with MOODS and Centos 6.5

  #19 opened 7 years ago by mdurante1
  3

• MOODS-python-1.9.1 error

  #6 opened 8 years ago by ekaasine
  7

• Input file format

  #17 opened 7 years ago by sudhirjadhao
  5

• mac installation

  #8 opened 8 years ago by jorgeboucas
  8

• Different log_odds output between MOODS and Biopython

  #15 opened 7 years ago by fabio-t
  3

• Multiprocessing on moods_dna.py

  #13 opened 8 years ago by vmesel
  3

• Probability PWM matrices

  #11 opened 8 years ago by prince26121991
  1

• Error with PWM input

  #10 opened 8 years ago by jfreimer
  1

• build setup

  #9 opened 8 years ago by sjneph
  1

• Compilation and installation problems

  #7 opened 8 years ago by biogberg
  5

• Failure to install under python3

  #3 opened 9 years ago by jonathan-wells
  1

• Incorrect PWM scores reported by MOODS

  #2 opened 10 years ago by chiyang
  1

• error when the pfm file contains float value

  #1 opened 10 years ago by zhilongjia
  1