jianshu93

jianshu93's Stars

• has2k1/plotnine

  A Grammar of Graphics for Python

  Language:Python4.1k65695229

• Rust-GPU/Rust-CUDA

  Ecosystem of libraries and tools for writing and executing fast GPU code fully in Rust.

  Language:Rust3.3k4679126

• CannyLab/tsne-cuda

  GPU Accelerated t-SNE for CUDA with Python bindings

  Language:Cuda1.8k30129130

• DLTcollab/sse2neon

  A translator from Intel SSE intrinsics to Arm/Aarch64 NEON implementation

  Language:C++1.3k37118212

• lmcinnes/pynndescent

  A Python nearest neighbor descent for approximate nearest neighbors

  Language:Python90914138107

• mjskay/ggdist

  Visualizations of distributions and uncertainty

  Language:R856924026

• Lokathor/tinyvec

  Just, really the littlest Vec you could need. So smol.

  Language:Rust658119551

• trevorld/ggpattern

  ggplot geoms with pattern fills

  Language:R3641011518

• jlmelville/uwot

  An R package implementing the UMAP dimensionality reduction method.

  Language:R3282111331

• waveygang/wfmash

  base-accurate DNA sequence alignments using WFA and mashmap3

  Language:C++18196721

• Illumina/DRAGMAP

  DRAGEN open-source mapper

  Language:C++167195732

• AnantharamanLab/vRhyme

  Binning Virus Genomes from Metagenomes

  Language:Python5933710

• COMBINE-lab/kmers

  A bit-packed k-mer representation (and relevant utilities) for rust

  Language:Rust47111010

• libscran/umappp

  C++ port of the UMAP algorithm

  Language:C++4631315

• OpenGene/UniqueKMER

  Generate unique KMERs for every contig in a FASTA file

  Language:C441178

• eXascaleInfolab/NodeSketch

  NodeSketch: Highly-Efficient Graph Embeddings via Recursive Sketching

  Language:Python331433

• alilleybrinker/semver-explain

  Explain semver requirements by converting them into less than, greater than, and/or equal to form.

  Language:Rust312102

• suchapalaver/krust

  Bioinformatics 101 tool for counting unique k-length substrings in DNA

  Language:Rust300185

• edawson/mkmh

  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.

  Language:C++24242

• anp/parasailors

  Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.

  Language:Rust21243

• davidMcneil/mnist

  MNIST data set parser https://crates.io/crates/mnist

  Language:Rust202811

• althonos/orthoani

  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

  Language:Python19433

• uzushino/rs-annoy

  spotify/annoy bindings for Rust.

  Language:C++18123

• knncolle/knncolle

  Collection of KNN algorithms in C++

  Language:C++13465

• uzushino/little-annoy

  A minimal implementation of spotify/annoy in pure rust

  Language:Rust11311

• pjedge/rust-spoa

  Rust crate with bindings and interface to the SPOA library for generating consensus sequences.

  Language:Rust10313

• bionitio-team/bionitio-rust

  Demonstrating best practices for bioinformatics command line tools

  Language:Rust9711

• mustafa-guler/libhmmer-sys

  A thin rust wrapper around libhmmer

  Language:Rust5384

• jeanmanguy/multi-seq-align

  A crate to manipulate multiple sequences alignments in Rust.

  Language:Rust4112

• LTLA/yaumap

  Yet Another UMAP package for R

  Language:C++4411