Can one extract the ligand-receptor pairs as a list?
tkapello opened this issue · 1 comments
tkapello commented
Hi,
I was wondering whether it is possible to save the significant ligand-receptor pairs and statistics/communication probability from a cell-cell interaction as a table or a list for further study.
Thanks in advance!
sqjin commented
@tkapello Please the tutorial on Extract the inferred cellular communication network as a data frame
.
df.net <- subsetCommunication(cellchat)
returns a data frame consisting of all the inferred cell-cell communications at the level of ligands/receptors. Set slot.name = "netP"
to access the the inferred communications at the level of signaling pathways