jinworks/CellChat

Can one extract the ligand-receptor pairs as a list?

tkapello opened this issue · 1 comments

Hi,

I was wondering whether it is possible to save the significant ligand-receptor pairs and statistics/communication probability from a cell-cell interaction as a table or a list for further study.

Thanks in advance!

@tkapello Please the tutorial on Extract the inferred cellular communication network as a data frame.
df.net <- subsetCommunication(cellchat) returns a data frame consisting of all the inferred cell-cell communications at the level of ligands/receptors. Set slot.name = "netP" to access the the inferred communications at the level of signaling pathways