joaosegurilho

joaosegurilho's Stars

• hydralauncher/hydra

  Hydra is a game launcher with its own embedded bittorrent client and a self-managed repack scraper.

  Language:TypeScript9.6k1.8k

• mdshw5/pyfaidx

  Efficient pythonic random access to fasta subsequences

  Language:Python44674

• cultivarium/GenomeSPOT

  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome

  Language:Jupyter Notebook281

• Azgaar/Fantasy-Map-Generator

  Web application generating interactive and highly customizable maps

  Language:JavaScript4.4k621

• biobakery/biobakery_workflows

  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

  Language:Python9333

• dienerlab/pipelines

  A monorepo containing all of our Nextflow pipelines.

  Language:Nextflow1

• franciscozorrilla/systems-biology-fba-practical

  University of Cambridge Part III Systems Biology course, practical exercises for learning flux balance analysis

  Language:HTML31

• DD-DeCaF/tutorials

  Teaching materials for cobrapy, cameo, escher and DD-DeCaF

  Language:Jupyter Notebook217

• Gibbons-Lab/pipelines

  Pipelines used in the lab.

  Language:Nextflow82

• conchoecia/odp

  oxford dot plots

  Language:Python1179

• DerwenAI/kglab

  Graph Data Science: an abstraction layer in Python for building knowledge graphs, integrated with popular graph libraries – atop Pandas, NetworkX, RAPIDS, RDFlib, pySHACL, PyVis, morph-kgc, pslpython, pyarrow, etc.

  Language:Jupyter Notebook56564

• microsoft/Data-Science-For-Beginners

  10 Weeks, 20 Lessons, Data Science for All!

  Language:Jupyter Notebook27k5.6k

• has2k1/plotnine

  A Grammar of Graphics for Python

  Language:Python3.9k209

• soedinglab/spacedust

  Discovery of conserved gene clusters in multiple genomes

  Language:C421

• pirovc/multitax

  Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)

  Language:Python352

• ReScience/ReScience

  The ReScience journal. Reproducible Science is Good. Replicated Science is better.

  69436

• biosustain/shu

  Multi-dimensional, trans-omics metabolic maps.

  Language:Rust38

• johnBuffer/AntSimulator

  Simple Ants simulator

  Language:C++2.2k279

• robotoD/GenoVi

  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea

  Language:Python6711

• dbikard/genomenotebook

  A genome browser in your Jupyter notebook

  Language:Jupyter Notebook251

• vrmarcelino/MetaModels

  Scripts to analyse metagenome-wide metabolic models

  Language:Python101

• tttianhao/CLEAN

  CLEAN: a contrastive learning model for high-quality functional prediction of proteins

  Language:Python20039

• CIDARLAB/cello

  Genetic circuit design automation

  Language:Java801132

• franciscozorrilla/metaGEM

  :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

  Language:Python17638

• nadavbra/protein_bert

  Language:Jupyter Notebook46295

• pola-rs/polars

  Dataframes powered by a multithreaded, vectorized query engine, written in Rust

  Language:Rust27.8k1.7k

• bio2rdf/bio2rdf-scripts

  Scripts that Bio2RDF users have created to generate RDF versions of scientific datasets

  Language:Java12846

• rust-bio/rust-bio

  This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

  Language:Rust1.5k202

• lux-org/lux

  Automatically visualize your pandas dataframe via a single print! 📊 💡

  Language:Python5.1k362

• 3b1b/manim

  Animation engine for explanatory math videos

  Language:Python60.3k5.7k