jodyphelan/TBProfiler

Issues

• VCF deviates from the VCF v4.2 specification

  #387 opened 3 months ago by mhkc
  2

• Run failed_error while loading shared libraries

  #390 opened 3 months ago by NabilaIsmail
  3

• Delly requiring older libboost

  #393 opened 3 months ago by conmeehan
  3

• bcftools fails to find directory in /sctmp

  #383 opened 4 months ago by svannib
  1

• Dealing with structural variants

  #386 opened 4 months ago by mdediegofuertes
  2

• Difference between results of installed tbprofiler pipeline and online version

  #389 opened 3 months ago by RehmanZaira
  0

• Missing position

  #388 opened 3 months ago by alantsangmb
  0

• Question about tree utilized to create lineage defining barcodes

  #384 opened 4 months ago by mariaelf97
  0

• samtools error in tb-profiler v6.3.0

  #382 opened 4 months ago by moks-micro
  2

• Missing Json format for tb-profiler 6.2.1 collate output

  #381 opened 4 months ago by yujun2017
  0

• iTOL files not created

  #366 opened 4 months ago by moks-micro
  10

• Cannot perform lineage and spoligotype in v6.2.1

  #365 opened 4 months ago by thanadon1437
  4

• TB-PROFILER RUN ISSUE

  #379 opened 5 months ago by BhawnaY16
  7

• inconsistency between Resistance report and Resistance variants report

  #375 opened 5 months ago by alantsangmb
  2

• Why are genes not associated with drug resistance included in tbdb.bed?

  #378 opened 4 months ago by mariaelf97
  2

• QC metrics

  #377 opened 4 months ago by thanadon1437
  5

• ERROR MESSAGE

  #371 opened 5 months ago by tuelomogashoa
  19

• [E::bcf_hdr_read] Input is not detected as bcf or vcf format

  #367 opened 5 months ago by schorlton-bugseq
  7

• Rifampin resistance rpoB_p.Pro454Ser

  #368 opened 6 months ago by bajwamoneeb
  7

• Variant reported at wrong frequency

  #344 opened 7 months ago by insapathogenomics
  3

• update_tbdb-Unable to update the database

  #376 opened 5 months ago by BhawnaY16
  2

• TBProfiler Dealing with 1S6110 insertions

  #374 opened 5 months ago by vrennie
  5

• Clarification on 'qc' variants

  #373 opened 5 months ago by vrennie
  16

• Clarificz

  #372 opened 5 months ago by vrennie
  0

• Update tbdb with user-specified reference genome doesn’t work

  #351 opened 7 months ago by ryanjameskennedy
  1

• Problem in running the profile pipeline

  #369 opened 6 months ago by ngs12321sgn
  1

• cannot find in Anacodon

  #363 opened 6 months ago by alantsangmb
  2

• Cannot profile the nanopore file

  #362 opened 6 months ago by thanadon1437
  6

• Prediction issue

  #346 opened 6 months ago by RehmanZaira
  6

• Question about tbdb.barcode.bed coordinates

  #340 opened 8 months ago by mariaelf97
  4

• Issue with Pathogen Profiler combine_vcf_variants.py script

  #345 opened 7 months ago by taranewman
  16

• version 6.2.0 error in lineage prediction

  #355 opened 7 months ago by alantsangmb
  4

• Close Samples

  #356 opened 7 months ago by jodyphelan
  0

• Add stop lost variants to hgvs parsing

  #358 opened 7 months ago by jodyphelan
  0

• `tb-profiler update_tbdb --match_ref` fails

  #337 opened 7 months ago by schorlton-bugseq
  11

• Samclip use

  #357 opened 7 months ago by jodyphelan
  0

• Temporary files

  #354 opened 7 months ago by MarcNiebel
  2

• v6.2.0 not reporting "missing positions report"

  #342 opened 7 months ago by insapathogenomics
  2

• Unreported deletion in pncA gene

  #343 opened 7 months ago by insapathogenomics
  1

• TypeError: Parallel.__init__() got an unexpected keyword argument 'return_as

  #327 opened 7 months ago by FrancisFCHsu
  1

• parallel: Error

  #330 opened 9 months ago by Huicen01
  1

• QC failed variants report

  #338 opened 7 months ago by alantsangmb
  1

• Question about source of tbdb.spoligotype_list.csv

  #341 opened 7 months ago by RikkeMLarsen
  1

• v6.2.0 fails to import tbdb (whov2)

  #339 opened 7 months ago by abhi18av
  2

• Issue with QC failed variants report, Missing positions report and Analysis pipeline specifications in TBProfiler v6.0.0

  #334 opened 8 months ago by alantsangmb
  1

• Enabling strict WHO database mode

  #333 opened 8 months ago by vrennie
  2

• Issue with TB-Profiler Web Version: Uploading FASTQ.GZ Files Fails

  #329 opened 8 months ago by Bowmore12
  2

• Missing Fluoroquinolone profile in the itol reports

  #331 opened 8 months ago by emilyncosta
  5

• No module found error

  #328 opened 9 months ago by Michaelijesse
  0

• ModuleNotFoundError

  #326 opened 10 months ago by toyukonara
  0