josephdviviano/epitome

Issues

• filter order

  #59 opened 7 years ago
  2

• MODULE: linreg_fs2epi_fsl typo

  #58 opened 7 years ago
  1

• McRetroTS error

  #57 opened 7 years ago
  11

• epi-genregress fails on some subjects

  #55 opened 8 years ago
  2

• epi-genregress SVD did not converge

  #54 opened 8 years ago
  2

• need a way to regress mean signal from GM.

  #53 opened 8 years ago
  1

• epi-randomize and covariate interactions

  #52 opened 8 years ago
  1

• fs-export won't run

  #51 opened 8 years ago
  2

• Unable to run epitome on Sharcnet

  #50 opened 8 years ago
  1

• make init_epi_copy

  #49 opened 8 years ago
  1

• make calc_headmotion module

  #48 opened 8 years ago
  1

• break deskulling out of motion-deskull

  #47 opened 8 years ago
  1

• autobox should change the size of the mask

  #46 opened 8 years ago
  1

• write 3dAutobox module

  #45 opened 8 years ago
  0

• make a seperate calc DVARS module

  #43 opened 8 years ago
  1

• Freesurfer to MNI

  #41 opened 8 years ago
  1

• Missing matlab library for physio

  #39 opened 9 years ago
  1

• matlab libraries linking problem

  #38 opened 8 years ago
  4

• add MIPAV and cbs tools as an alternative to freesurfer

  #37 opened 8 years ago
  1

• add fieldmap module

  #36 opened 8 years ago
  1

• T1 template wasn't copied into my epitome copy..

  #35 opened 9 years ago
  6

• installation funness

  #34 opened 9 years ago
  2

• Bug: linreg_fs2epi_fsl failes if it is run after nonlinreg_calc_fsl

  #33 opened 8 years ago
  2

• anat_smoothmask conflicts across runs of epitome.

  #32 opened 9 years ago
  1

• epi-regtarget should be derrived from anat_MNI

  #31 opened 9 years ago
  0

• AFNI and FSL reg mask names need to be unified

  #30 opened 9 years ago
  0

• nonlinreg_AFNI is broken

  #29 opened 8 years ago
  2

• break init_epi into a set of modules:

  #28 opened 9 years ago
  1

• replace 3dtshift with slicetimer from fsl

  #27 opened 8 years ago
  1

• make AFNI less chatty when things are going well

  #26 opened 9 years ago
  1

• Investigate CMTK

  #25 opened 8 years ago
  0

• We need ANTS registration modules.

  #24 opened 8 years ago
  0

• epitome failed for IMOB during registrations

  #23 opened 9 years ago
  9

• work in these methods

  #21 opened 9 years ago
  0

• qc_motionind is broken -- 'no such file or directory'

  #20 opened 9 years ago
  1

• epi-queue fails to submit any 'cmd' scripts if the proclist does not contain any qc calls.

  #19 opened 9 years ago
  1

• 'volsmooth' module breaking down

  #18 opened 9 years ago
  1

• linreg_AFNI relies on the /tmp directory and this causes conflicts in the queue

  #16 opened 9 years ago
  1

• epitome clean is broken

  #15 opened 9 years ago
  1

• Include epitome script in nifti header

  #13 opened 8 years ago
  1

• A couple of questions about epitome

  #11 opened 9 years ago
  1

• Not running FreeSurfer pipeline

  #10 opened 9 years ago
  4

• :D

  #9 opened 9 years ago
  1

• qc_spectra segmentation fault

  #6 opened 8 years ago
  2

• freesurfer jobs are not held for when using epi-queue

  #5 opened 9 years ago
  1

• linreg / nonlinreg need serious cleaning up

  #4 opened 9 years ago
  3

• Code shared across scripts should be amalgomated under ninet.

  #3 opened 9 years ago
  1

• Python scripts should not need so many inputs

  #2 opened 9 years ago
  1

• QC: ICE default IO error handler doing an exit() -- no plots generated

  #1 opened 9 years ago
  1