kanaverse/bakana

Issues

• Upcoming changes to the analysis parameters

  #79 opened a year ago by LTLA
  0

• Promise is pending and the variables are undefined. (bakana.TenxMatrixMarketDataset)

  #73 opened 2 years ago by ygao61
  3

• Increment all cluster numbers when exporting the `SummarizedExperiment`.

  #70 opened 2 years ago by LTLA
  0

• Error from skipping QC

  #71 opened 2 years ago by LTLA
  1

• Add option to turn off composition bias removal during ADT normalization

  #66 opened 2 years ago by LTLA
  0

• Proposed new strategy for handling saving and loading

  #52 opened 2 years ago by LTLA
  2

• Sustainability of state restoration

  #45 opened 2 years ago by LTLA
  0

• Note to self about version 2.0

  #40 opened 2 years ago by LTLA
  0

• Avoid decoding to string before using papaparse

  #36 opened 2 years ago by LTLA
  0

• Implementations of `Dataset.load()` should free resources immediately

  #35 opened 2 years ago by LTLA
  1

• Create a general-purpose downloading function

  #32 opened 2 years ago by LTLA
  1

• Make the Node.js kana file parsers and creators work with Uint8Arrays

  #34 opened 2 years ago by LTLA
  0

• needs version bump

  #26 opened 2 years ago by jkanche
  1

• Don't return the custom selection indices in the parameters.

  #25 opened 2 years ago by LTLA
  1

• Collapse factors in the H5AD reader to string arrays

  #12 opened 3 years ago by LTLA
  0

• ADT aware response

  #20 opened 3 years ago by jkanche
  1

• breaks when # of HVG from the parameters is > number of genes in the dataset

  #13 opened 3 years ago by jkanche
  0

• Remove the `range` determination for QC

  #5 opened 3 years ago by LTLA
  1

• Add tests for the correct retrieval of markers and custom selections

  #3 opened 3 years ago by LTLA
  0

• Add tests for the correct retrieval of expression values

  #4 opened 3 years ago by LTLA
  0

• SNN clustering scheme should be a string

  #2 opened 3 years ago by LTLA
  0