kbandrew24

kbandrew24's Stars

• analyticalmonk/awesome-neuroscience

  A curated list of awesome neuroscience libraries, software and any content related to the domain.

  1.3k791148

• nilearn/nilearn

  Machine learning for NeuroImaging in Python

  Language:Python1.2k682.1k611

• masumhabib/PlotPub

  Publication quality plot in MATLAB.

  Language:MATLAB290232491

• rordenlab/MRIcroGL

  v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.

  Language:Python20796033

• brainglobe/brainglobe-atlasapi

  A lightweight python module to interact with atlases for systems neuroscience

  Language:Python127923434

• cortex-lab/allenCCF

  Tools to work with Allen Inst CCF data in matlab

  Language:MATLAB124144678

• ClearAnatomics/ClearMap

  ClearMap 2 with WobblyStitcher, TubeMap and CellMap

  Language:Jupyter Notebook1142414445

• mattools/matImage

  Image Processing library for Matlab

  Language:MATLAB10513240

• YaleMRRC/CPM

  Language:MATLAB83171232

• NewGuy012/spider_plot

  Create a spider or radar plot with individual axes.

  Language:MATLAB700818

• petersaj/AP_histology

  Histology processing

  Language:MATLAB64113422

• paul-kassebaum-mathworks/circularGraph

  Plot an interactive circular graph to illustrate connections in a network in MATLAB.

  Language:Matlab534017

• AllenInstitute/mouse_connectivity_models

  Python package providing mesoscale connectivity models for mouse.

  Language:Python3983015

• rklymentiev/py-for-neuro

  source code for the "Python for Neuroscience" course

  Language:HTML231415

• IBT-FMI/mouse-brain-templates

  Generate a package-manager-friendly mouse brain atlases collection.

  Language:Shell20337

• DynamicsAndNeuralSystems/catchaMouse16

  catchaMouse16: CAnonical Time-series CHaracteristics for Mouse fMRI

  Language:C15203

• mychan24/r-for-brain-network

  Analyze brain surface/volume (gifti, cifti, nifti) in R and extract networks

  Language:HTML10213

• SainsburyWellcomeCentre/AllenBrainAPI

  Access the Allen Brain Atlas API from MATLAB

  Language:MATLAB10522

• cberri/Quanty-cFOS

  An unbiased tool to count Fos/c-fos positive cells

  Language:ImageJ Macro73

• andersonion/SAMBA

  An HPC cluster-based pipeline for atlas creation, voxel- and label-based analysis (and more!)

  Language:Perl6301

• mychan24/system-segregation-and-graph-tools

  System segregation (see Chan et al. 2014 PNAS) and RSFC brain network tools

  Language:MATLAB6234

• Mic-map/PIRACY

  Language:Python5103

• RobertoDF/BRIO

  BRain area Input Output

  Language:MATLAB5200

• Zapit-Optostim/AllenAtlasTopDown

  Top-down view of the Allen Atlas in stereotaxic coords

  Language:MATLAB5110

• juhuntenburg/mouse_gradients

  Language:Jupyter Notebook4303

• valeriabonapersona/abc4d

  Data cleaning and analysis of whole-brain data (over time). Developed on the basis of the Allen Brain Reference Atlas (mouse, 25µm), but most functions are be applied independently of the model organism.

  Language:R4321

• DrCarbonCIMH/MouseAtlas

  Tool to interactively create a Mouse Brain Atlas.

  Language:MATLAB3201

• TrangeTung/Mouse_Sleep_fMRI

  Language:MATLAB3131

• AllenInstitute/DMN

  Supporting code for Whitesell et al., 2020 "Regional, layer, and cell-class specific connectivity of the mouse default mode network"

  Language:Jupyter Notebook2401

• TrangeTung/optogenetic_BF_fMRI

  Language:MATLAB1100