kbandrew24's Stars
nilearn/nilearn
Machine learning for NeuroImaging in Python
masumhabib/PlotPub
Publication quality plot in MATLAB.
rordenlab/MRIcroGL
v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.
gentoo/sci
[MIRROR] Gentoo Science Overlay
brainglobe/brainglobe-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
cortex-lab/allenCCF
Tools to work with Allen Inst CCF data in matlab
ClearAnatomics/ClearMap
ClearMap 2 with WobblyStitcher, TubeMap and CellMap
mattools/matImage
Image Processing library for Matlab
YaleMRRC/CPM
NewGuy012/spider_plot
Create a spider or radar plot with individual axes.
petersaj/AP_histology
Histology processing
paul-kassebaum-mathworks/circularGraph
Plot an interactive circular graph to illustrate connections in a network in MATLAB.
AllenInstitute/mouse_connectivity_models
Python package providing mesoscale connectivity models for mouse.
rklymentiev/py-for-neuro
source code for the "Python for Neuroscience" course
IBT-FMI/mouse-brain-templates
Generate a package-manager-friendly mouse brain atlases collection.
DynamicsAndNeuralSystems/catchaMouse16
catchaMouse16: CAnonical Time-series CHaracteristics for Mouse fMRI
mychan24/r-for-brain-network
Analyze brain surface/volume (gifti, cifti, nifti) in R and extract networks
SainsburyWellcomeCentre/AllenBrainAPI
Access the Allen Brain Atlas API from MATLAB
cberri/Quanty-cFOS
An unbiased tool to count Fos/c-fos positive cells
andersonion/SAMBA
An HPC cluster-based pipeline for atlas creation, voxel- and label-based analysis (and more!)
mychan24/system-segregation-and-graph-tools
System segregation (see Chan et al. 2014 PNAS) and RSFC brain network tools
Mic-map/PIRACY
RobertoDF/BRIO
BRain area Input Output
Zapit-Optostim/AllenAtlasTopDown
Top-down view of the Allen Atlas in stereotaxic coords
juhuntenburg/mouse_gradients
valeriabonapersona/abc4d
Data cleaning and analysis of whole-brain data (over time). Developed on the basis of the Allen Brain Reference Atlas (mouse, 25µm), but most functions are be applied independently of the model organism.
DrCarbonCIMH/MouseAtlas
Tool to interactively create a Mouse Brain Atlas.
TrangeTung/Mouse_Sleep_fMRI
AllenInstitute/DMN
Supporting code for Whitesell et al., 2020 "Regional, layer, and cell-class specific connectivity of the mouse default mode network"
TrangeTung/optogenetic_BF_fMRI