kblin/ncbi-acc-download

Issues

• Document best use cases versus alternatives

  #25 opened a year ago by peterjc
  0

• Can't download gff3 files when running in --recursive mode.

  #24 opened a year ago by ewilbanks
  0

• test suite failure with biopython 1.79

  #23 opened 3 years ago by emollier
  8

• Add genomic range option

  #19 opened 3 years ago by zdk123
  2

• Accession range support?

  #16 opened 4 years ago by peterjc
  1

• running with `--format fasta` creates an empty fa file

  #21 opened 4 years ago by orenmn
  2

• NCBI Entrez returned error code 429, are ID(s) [...] valid?

  #20 opened 4 years ago by orenmn
  3

• Question - Is it possible to download synthetic sequences (taxid 81077) with ngd

  #18 opened 4 years ago by jagos01
  2

• syntax error

  #15 opened 4 years ago by germant13
  4

• Issue with recursive download

  #13 opened 5 years ago by Anto007
  15

• Retry on failure?

  #14 opened 5 years ago by dfornika
  2

• Better user-facing messages on invalid IDs

  #1 opened 6 years ago by areejalsheikh
  2

• Download error 400

  #12 opened 5 years ago by ganiatgithub
  2

• ncbi_acc_download.errors.DownloadError: Download failed with return code: 400

  #11 opened 5 years ago by shimingtan
  3

• Connection broken

  #9 opened 5 years ago by shimingt
  1

• The -F gff3 output has no header

  #5 opened 6 years ago by tseemann
  3

• Print what files you created when using -v mode

  #7 opened 6 years ago by tseemann
  1

• Unable to run examples

  #10 opened 5 years ago by hrwaik
  2

• Entrez search support?

  #8 opened 6 years ago by peterjc
  3

• GFF3 files with sequence included

  #6 opened 6 years ago by tseemann
  1

• Write to a specified file name without implicit extension

  #3 opened 6 years ago by sjackman
  9

• Download a GFF file [feature request]

  #4 opened 6 years ago by sjackman
  7

• Should it depend on Biopython

  #2 opened 6 years ago by sjackman
  3