Do no need "testCovariate"
Closed this issue · 2 comments
zhen-fu commented
Hi Keegan,
Thanks for the great package! I do have a quick question if I do not need to testCovariate, is there anyway I can still run dmrseq function without setting "testCovariate"?
Thank you very much!
kdkorthauer commented
Hi @zhen-fu, Can you clarify the goal of your analysis, if there are no differences of interest? Thanks!
zhen-fu commented
I am so sorry, I think I totally misunderstood testCovariate in the vignette.
For some reason I thought testCovariate is the the covariate that we want to adjusting for. I guess here it means it is the main factor that we are interested, like the celltype (imr90 and h1) in your BS.chr21. So sorry about this!