ksahlin/isONclust

Issues

• Memory Problems with ONT Data

  #23 opened a year ago by eprdz
  8

• Error on write_fastq

  #25 opened 2 months ago by NHoang98
  9

• Working with huge datasets

  #24 opened 7 months ago by timyerg
  7

• Is it possible to add a “--shortname" option for isONclust to output the read name with “the read id only”?

  #18 opened 3 years ago by lauraht
  1

• Is it possible to use isOnclust on multiple samples?

  #22 opened 2 years ago by DesmondoDekker
  4

• About the read order in each cluster in the final_clusters.tsv file

  #20 opened 3 years ago by lauraht
  6

• RE: IsONclust on ONY; spot died with <Signals.SIGILL: 4>.

  #21 opened 3 years ago by Malabady
  2

• homopolymer compression?

  #19 opened 3 years ago by nextgenusfs
  4

• Is it possible to use isONclust to help determine whether two reads came from the same isoform?

  #17 opened 3 years ago by lauraht
  15

• Incorporation of isONclust to a currently used pipeline (Iso-Seq, PacBio)

  #5 opened 3 years ago by emaleckova
  5

• Usage of --consensus to generate a non redundant fasta file with unique transcript sequences

  #11 opened 3 years ago by ALSP6OCT
  8

• TypeError with simulated fastq data

  #12 opened 3 years ago by jkomyno
  1

• ValueError: min() arg is an empty sequence

  #16 opened 4 years ago by JoshLoecker
  8

• pipeline not an option

  #15 opened 4 years ago by danessel
  1

• Dependencies for running --medaka argument

  #14 opened 4 years ago by Alxdu
  2

• Stranded vs unstranded sequencing

  #8 opened 4 years ago by wenzelm
  2

• struct.error

  #10 opened 5 years ago by huangziyan11111
  7

• Version mismatch with pypi repos

  #9 opened 5 years ago by mptrsen
  1

• error: too few arguments

  #7 opened 5 years ago by srbehera
  3

• isonclust command for ONT data

  #4 opened 5 years ago by marisalim
  19

• isONclust: error: too few arguments

  #6 opened 5 years ago by emaleckova
  2

• get_sorted_fastq_for_cluster.py, line 124 // p_no_error_in_kmers = 1.0 - exp_errors_in_kmers/ float((len(seq) - k +1))

  #3 opened 6 years ago by uqvirg
  4

• Add script to create separate fasta for each cluster

  #2 opened 6 years ago by ksahlin
  1

• Threads error

  #1 opened 6 years ago by vineeth-s
  1