kunstner

kunstner's Stars

• Kamik423/Padbury-Clock-Revived

  Reimplementation of the famous screen saver

  Language:Swift404

• stephenturner/mergelanes

  Merge fastq files split over lanes

  Language:Shell2011

• ollama/ollama

  Get up and running with Llama 3.3, Mistral, Gemma 2, and other large language models.

  Language:Go106k8.5k

• NKI-GCF/XenofilteR

  Filtering of PDX samples for mouse derived reads

  Language:R277

• reiterlab/treeomics

  Decrypting somatic mutation patterns to reveal the evolution of cancer

  Language:Python5515

• XQuartz/XQuartz

  An X11 server and client libraries for macOS

  Language:Shell85155

• statdivlab/raoBust

  Generalized Linear Models with robust and non-robust Wald and Rao (score) tests

  Language:R74

• ikmb/exome-seq

  A best-practice exome analysis workflow.

  Language:Nextflow3

• tulerpetontidae/psmc-python

  A reimplementation of a classical PSMC method in python for educational purposes

  Language:Jupyter Notebook142

• suhrig/arriba

  Fast and accurate gene fusion detection from RNA-Seq data

  Language:C++22950

• blekhmanlab/host_gene_microbiome_interactions

  Analysis framework for integrating gut microbiome and host gene expression data

  Language:R3112

• AliceSommer/Causal_Microbiome_Tutorial

  Causal inference framework for environment-microbiome data applied to American Gut data.

  Language:R82

• barakbri/dacomp

  Non parametric differential abundance tests for microbiome data

  Language:R91

• shahcompbio/xseq

  A hierarchical Bayesian approach to assess functional impact of mutations on gene expression in cancer.

  Language:R63

• bwa-mem2/bwa-mem2

  The next version of bwa-mem

  Language:C++728102

• RichardJActon/DNAmAgeMini

  Language:R12

• signalbash/how_are_we_stranded_here

  Check strandedness of RNA-Seq fastq files

  Language:Python11825

• S-YIN/MIXnorm

  MIXnorm: Normalizing Gene Expression Data from RNA Sequencing of Formalin-Fixed Paraffin-Embedded Samples

  Language:R2

• microDM/MicFunPred

  A conserved approach to predict functional profiles from 16S rRNA sequence data

  Language:Python66

• kbroman/datasciquotes

  Data Science related quotes

  867

• EvaYiwenWang/Microbiome_variable_selection_tutorial

  Language:Python21

• buschlab/MIRACUM-Pipe-singularity

  MIRACUM-Pipe is a whole exome and panel sequencing pipeline for precision oncology (https://github.com/AG-Boerries/MIRACUM-Pipe). This repository is a port of the pipeline running inside a singularity container.

  Language:R41

• EvaYiwenWang/PLSDAbatch_workflow

  Language:R178

• microbiome/microbiome

  microbiome R package

  Language:R28955

• thepracticaldev/orly-full-res

  Full resolution images of the O RLY book covers made by The Practical Dev

  2.7k140

• konradjk/loftee

  Language:Perl17455

• Bioconductor/BiocStickers

  Stickers for some Bioconductor packages - feel free to contribute and/or modify.

  Language:R12488

• hoffmangroup/pdfcomments

  Language:Python12910

• louiejtaylor/grabseqs

  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

  Language:Python10516

• matmu/vep

  Recipe for VEP + Cache

  45