lbgbox

lbgbox's Stars

• microsoft/ML-For-Beginners

  12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all

  Language:HTML70.2k1k13614.7k

• scikit-learn/scikit-learn

  scikit-learn: machine learning in Python

  Language:Python60.6k2.1k11.3k25.5k

• apache/spark

  Apache Spark - A unified analytics engine for large-scale data processing

  Language:Scala40.3k2k028.4k

• scikit-image/scikit-image

  Image processing in Python

  Language:Python6.1k1862.7k2.2k

• MouseLand/cellpose

  a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

  Language:Jupyter Notebook1.4k29920410

• crazyhottommy/scRNAseq-analysis-notes

  scRNAseq analysis notes from Ming Tang

  660460162

• computationalpathologygroup/ASAP

  Program for the analysis and visualization of whole-slide images in digital pathology

  Language:C++62426257165

• broadinstitute/infercnv

  Inferring CNV from Single-Cell RNA-Seq

  Language:R58140586166

• seung-lab/connected-components-3d

  Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

  Language:C++388286143

• histolab/histolab

  Library for Digital Pathology Image Processing

  Language:Python384615258

• huangtinglin/Linear-Algebra-and-Its-Applications-notes

  《线性代数及其应用》笔记

  Language:Jupyter Notebook3527186

• kanaverse/kana

  Single cell analysis in the browser

  Language:JavaScript142612112

• applied-bioinformatics/iab2

  An Introduction to Applied Bioinformatics, 2nd Edition

  Language:TeX1313515

• GuyTeichman/RNAlysis

  Analyze your RNA sequencing data without writing a single line of code

  Language:Python12942913

• ijpb/MorphoLibJ

  Collection of mathematical morphology methods and plugins for ImageJ

  Language:Java101176548

• WhoIsJack/python-bioimage-analysis-tutorial

  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.

  Language:Jupyter Notebook963339

• moiexpositoalonsolab/grenepipe

  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.

  Language:Python9545921

• kristinbranson/APT

  Animal Part Tracker

  Language:MATLAB722440714

• juglab/DenoiSeg

  Joint training of denoising and segmentation.

  Language:Jupyter Notebook69111221

• BIOP/qupath-extension-cellpose

  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.

  Language:Jupyter Notebook6773511

• fish-quant/big-fish

  Toolbox for the analysis of smFISH images.

  Language:Python5886619

• PingjunChen/pyslide

  Digital Pathology Whole Slide Image Analysis Toolbox

  Language:Python48328

• juglab/labkit-ui

  Advanced Tool for Labeling And Segmentation

  Language:Java3478421

• ElementoLab/utag

  Language:Python337810

• BIOP/ijl-utilities-wrappers

  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)

  Language:Java325316

• artic-network/primer-schemes

  Primer schemes for real-time genome epidemiology

  Language:Python2712942

• haesleinhuepf/napari-simpleitk-image-processing

  Process images using SimpleITK in napari

  Language:Python193144

• nolanlab/TissueSchematics

  Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"

  Language:Jupyter Notebook10612

• jwrth/xDBiT_toolbox

  Analysis pipeline for multiplexed Deterministic Barcoding in Tissue (xDBiT)

  Language:Jupyter Notebook6102

• lbgbox/postcode

  Decoding of image-based spatial transcriptomics

  Language:Jupyter Notebook1000