BIOP/qupath-extension-cellpose

Issues

• Specify intensity measurements in CellposeBuilder

  #49 opened 3 months ago by RouvenHoefflin
  0

• Training cellpose on brightfield images (R, G, and B channels)

  #48 opened 5 months ago by danidean
  1

• outdated readme

  #47 opened 5 months ago by NicoKiaru
  0

• Scripts from menu Extension > Cellpose > Detect nuclei and cells ...

  #45 opened 5 months ago by romainGuiet
  0

• channels name can not contain space

  #38 opened 7 months ago by romainGuiet
  1

• can not export upscaled image

  #39 opened 5 months ago by romainGuiet
  2

• Better error logging when cellpose/omnipose fails

  #41 opened 5 months ago by lacan
  1

• perhaps check that files are written before running environment runner

  #42 opened 5 months ago by lacan
  1

• Offer cell + nuclei detection to create "real" cells

  #43 opened 7 months ago by lacan
  0

• Make paths space safe

  #34 opened 10 months ago by NicoKiaru
  2

• Help with installation

  #36 opened 10 months ago by apal6
  10

• Further training on an image?

  #26 opened a year ago by penguingiraffe2
  2

• Count number of individual masks

  #32 opened a year ago by saarah815
  3

• Custom training model

  #31 opened a year ago by saarah815
  3

• "WARN: Unable to write image" when running Cellpose_training_template.groovy

  #30 opened a year ago by tvanluu07
  4

• run for project freezes intermittently

  #16 opened 2 years ago by mezwick
  13

• Disambiguate parameter names in Cellpose/Omnipose preferences

  #28 opened a year ago by lacan
  0

• Select save and temp folders during builder

  #27 opened a year ago by lacan
  2

• Bundle Training and Inference Scripts into extension and add an entry into Extensions > Cellpose

  #29 opened a year ago by lacan
  0

• Preprocessing options

  #23 opened a year ago by pakiessling
  1

• Getting a no compatible writer issue?

  #25 opened a year ago by penguingiraffe2
  3

• unrecognized arguments: -W ignore -m cellpose

  #24 opened a year ago by alexZhongvai
  1

• save output of image as single .tif?

  #21 opened a year ago by josenimo
  1

• Using other Cellpose 2.0 built-in models ?

  #19 opened 2 years ago by ofrag
  2

• bash no permission

  #20 opened 2 years ago by mcib3d
  2

• min_train_masks option

  #15 opened 2 years ago by RAHoebe
  7

• No annotations for detected object

  #13 opened 2 years ago by xcccc402
  1

• conda.bat path

  #12 opened 2 years ago by ZhaoJK
  2

• Cannot run init the conda env and run the python command

  #9 opened 3 years ago by bpavie
  4

• Add overlap option in builder

  #8 opened 3 years ago by lacan
  1

• Make better documentation

  #7 opened 3 years ago by lacan
  1

• Tiled Segmentation

  #5 opened 3 years ago by RAHoebe
  3

• cellpose 1.0

  #3 opened 3 years ago by RAHoebe
  1