prep_sample.R bug

[zhaleh-safikhani]

genes <- recount_genes
counts_gene <- lapply(split(as.data.frame(exon_counts), count_groups), colSums)
counts_gene <- do.call(rbind, counts_gene)
Error: object 'genes' not found

[lcolladotor]

Hm... that's weird since you just created the genes object in the first line of code you posted.

[zhaleh-safikhani]

ah it's because in your version it was 'gene' I changed it to 'genes' to make it work on my local machine! Anyway just wanted to let you know that so you can debug the github version

[lcolladotor]

Yeah, I realized that after double checking the code. Thanks for the bug reports!