lemora's Stars
janhq/jan
Jan is an open source alternative to ChatGPT that runs 100% offline on your computer. Multiple engine support (llama.cpp, TensorRT-LLM)
TheAlgorithms/Rust
All Algorithms implemented in Rust
astral-sh/uv
An extremely fast Python package and project manager, written in Rust.
optuna/optuna
A hyperparameter optimization framework
JabRef/jabref
Graphical Java application for managing BibTeX and biblatex (.bib) databases
jmschrei/pomegranate
Fast, flexible and easy to use probabilistic modelling in Python.
prefix-dev/pixi
Package management made easy
pyro-ppl/numpyro
Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.
tum-pbs/PhiFlow
A differentiable PDE solving framework for machine learning
soedinglab/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
steineggerlab/foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
thuml/depyf
depyf is a tool to help you understand and adapt to PyTorch compiler torch.compile.
EddyRivasLab/hmmer
HMMER: biological sequence analysis using profile HMMs
artyom-beilis/pytorch_dlprim
DLPrimitives/OpenCL out of tree backend for pytorch
google-deepmind/synjax
HadrienG/InSilicoSeq
:rocket: A sequencing simulator
artyom-beilis/dlprimitives
Deep Learning Primitives and Mini-Framework for OpenCL
EddyRivasLab/infernal
RNA secondary structure/sequence profiles for homology search and alignment
eternagame/EternaFold
Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
DasLab/draw_rna
Draw RNA secondary structures in python.
AutoPas/AutoPas
Autopas is a node-level auto-tuned particle simulation library developed in the context of the TaLPas project.
ls1mardyn/ls1-mardyn
ls1-MarDyn is a massively parallel Molecular Dynamics (MD) code for large systems. Its main target is the simulation of thermodynamics and nanofluidics. ls1-MarDyn is designed with a focus on performance and easy extensibility.
Shujun-He/RNAdegformer
eternagame/EternaBench
Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.
HSU-HPC/MaMiCo
The macro-micro-coupling tool for coupled molecular-continuum flow simulation
Weeks-UNC/RNAvigate
Very flexible tools for plotting and analyzing all kinds of RNA structure data
csfoo/contrafold-se
CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data
rkruegs123/jax-rnafold
sinc-lab/sincFold
RaminFkd/Quantifiying_MetaXAI_Using_Mutual_Information