EddyRivasLab/infernal
RNA secondary structure/sequence profiles for homology search and alignment
CNOASSERTION
Issues
- 14
Converting cmscan output to GFF3
#16 opened by sanyalab - 1
cmpress fails without useful information when .cm file contains 2 models with identical NAME
#43 opened by qifei9 - 1
cmbuild --refine bug related to fragments
#42 opened by nawrockie - 3
- 1
- 11
column offset in `--tblout`?
#39 opened by sjanssen2 - 15
arm/aarch64 version of infernal
#30 opened by Bicyclecardcn - 1
Bug: cmbuild --noh3pri results in use of v0.56->v1.0.2 prior instead of default prior
#36 opened by nawrockie - 6
cmalign core dump
#35 opened by bernt-matthias - 2
cmbuild with fragmentary sequences, terminal self-inserts can lead to problematically high self-insert probabilities
#34 opened by nawrockie - 1
- 4
Conda version 1.1.4 but -h shows 1.1.3
#32 opened by ramanujamr - 4
missing PP line
#29 opened by sjanssen2 - 5
Infernal on transcriptomes
#31 opened by sanyalab - 0
Please delete this issue
#27 opened by vragh - 3
Error: removing/marking overlapping hits, stop posn is inconsistent, hit 33085 during cmsearch run
#28 opened by jaswindersingh2 - 2
Unmasked or masked input genome
#26 opened by StevenBai97 - 5
time complexity of cmsearch
#25 opened by kad-ecoli - 2
how to get the ./configure file
#24 opened by li0604 - 3
make install error 1
#22 opened by NikkiCase - 4
- 1
- 0
- 3
- 1
Developer TODO: Add target accession (and possibly name) as tabular field(s) in cmsearch/cmscan --verbose output.
#1 opened by nawrockie - 1
Multiple attempts, won't build
#14 opened by etwatson - 8
- 4
annotating a large assembly/scaffolds
#13 opened by dcopetti - 1
Compiling the Entire Source
#7 opened by pramodcj - 1
the file configure doesn't exist
#12 opened by fretn - 2
Inconsistent results from qsort callback
#11 opened by yugr - 14
- 5
- 9
- 9
readme and packages, containers
#6 opened by bgruening - 3
- 3
cmscan,cmsearch cpu & mpi option definitions
#4 opened by kalvari