lina-kim
Playing with sequencing data and algorithms to solve biological questions.
ETH ZürichZürich, Switzerland
lina-kim's Stars
PAIR-code/facets
Visualizations for machine learning datasets
damianavila/RISE
RISE: "Live" Reveal.js Jupyter/IPython Slideshow Extension
dvanoni/notero
A Zotero plugin for syncing items and notes into Notion
OpenGene/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
lh3/seqtk
Toolkit for processing sequences in FASTA/Q formats
duerrsimon/bioicons
A library of free open source icons for science illustrations in biology and chemistry
sib-swiss/training-collection
Collection of bioinformatics training materials
tseemann/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
jupyter-server/enterprise_gateway
A lightweight, multi-tenant, scalable and secure gateway that enables Jupyter Notebooks to share resources across distributed clusters such as Apache Spark, Kubernetes and others.
qiime2/qiime2
Official repository for the QIIME 2 framework.
bactopia/bactopia
A flexible pipeline for complete analysis of bacterial genomes
gpertea/stringtie
Transcript assembly and quantification for RNA-Seq
hbctraining/Training-modules
Materials for short, half-day workshops
mikelove/DESeq2
Differential gene expression analysis based on the negative binomial distribution
marcoeilers/nagini
Nagini is a static verifier for Python 3, based on the Viper verification infrastructure.
crazyhottommy/The-world-of-faculty
resources for faculty
rasmusab/beepr
The package that sounds as it is called.
seqeralabs/nf-tower
Nextflow Tower system
melbournebioinformatics/MelBioInf_docs
Melbourne Bioinformatics documentation in markdown format
alylab/labmanual
Lab Manual for the Aly Lab at the University of California, Berkeley
PathoScope/PathoScope
Pathoscope: Species identification and strain attribution with unassembled sequencing data
mikelove/zinbwave-deseq2
Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
bokulich-lab/q2-fondue
Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere
qiime2/q2-feature-classifier
QIIME 2 plugin supporting taxonomic classification
Quansight/conferences
Contains conference presentations and public links.
qiime2/cancer-microbiome-intervention-tutorial
JupyterBook for QIIME 2 FAES January 2022 workshop
clintval/nucleic
Analysis and plotting library for base substitution spectra and signatures
biocore/q2-umap
Applying umap to microbiome data via QIIME2
bokulich-lab/q2-plugin-template
A skeleton for QIIME 2 plugins
qiime2/provenance-lib
QIIME 2 Provenance Replay Tools