lskatz/fasten

Issues

• use subcommand instead of so many commands

  #36 opened 5 months ago by jianshu93
  1

• fastq/fastq mergepe

  #35 opened 5 months ago by jianshu93
  1

• it would be great to update your io code to allow reading and writing of compressed files

  #34 opened 8 months ago by sharkLoc
  0

• [suggestion] Document, eventually enforce, input format

  #32 opened a year ago by telatin
  1

• fastq_mutate should always give -m mutations?

  #29 opened a year ago by telatin
  0

• Feature: Add command to convert to interleaved format and back from interleaved format back to 2 FASTQ files.

  #27 opened a year ago by ghuls
  1

• JOSS Review

  #20 opened a year ago by telatin
  8

• JOSS Paper citations

  #26 opened a year ago by bovee
  1

• Clarify README summary

  #25 opened a year ago by bovee
  1

• Consider adding documentation about `cargo install fasten`

  #23 opened a year ago by bovee
  1

• Consider std::io::Stdin instead of File('/dev/stdin')

  #22 opened a year ago by bovee
  1

• Feature Request: handle seqlen != quallen

  #15 opened a year ago by chrisgulvik
  3

• docs on what fasten_validate does?

  #3 opened 3 years ago by kapsakcj
  2

• fasten_trim reporting what it trimmed

  #6 opened 3 years ago by lskatz
  0

• add progress meter

  #1 opened 3 years ago by lskatz
  1

• numcpus does not work

  #2 opened 5 years ago by lskatz
  10