luanxiao

luanxiao's Stars

• hwanz/SSR-V2ray-Trojan

  机场推荐与机场评测

  4k530105

• kblin/ncbi-genome-download

  Scripts to download genomes from the NCBI FTP servers

  Language:Python95635145175

• tseemann/prokka

  :zap: :aquarius: Rapid prokaryotic genome annotation

  Language:Perl84947649226

• thackl/gggenomes

  A grammar of graphics for comparative genomics

  Language:R6041216165

• Ecogenomics/GTDBTk

  GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

  Language:Python4792346282

• oschwengers/bakta

  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

  Language:Python4521423955

• twbattaglia/RNAseq-workflow

  A repository for setting up a RNAseq workflow

  Language:R414273183

• wwood/CoverM

  Read coverage calculator for metagenomics

  Language:Rust3111116431

• YongxinLiu/EasyAmplicon

  Easy Amplicon data analysis pipeline

  Language:HTML256417104

• biobakery/humann

  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

  Language:Python174164159

• cmks/DAS_Tool

  DAS Tool

  Language:R14099717

• katholt/srst2

  Short Read Sequence Typing for Bacterial Pathogens

  Language:Python1252012165

• loneknightpy/idba

  Language:C++124115853

• BigDataBiology/SemiBin

  SemiBin: metagenomics binning with self-supervised deep learning

  Language:Python117611610

• bhattlab/MGEfinder

  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.

  Language:Python11034916

• smaegol/PlasFlow

  Software for prediction of plasmid sequences in metagenomic assemblies

  Language:Python9884128

• shenmengyuan/RNA_seq_Biotrainee

  DEG analysis and KEGG/GO enrichment analysis

  Language:R678229

• pianpianyouche/plascad

  Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.

  Language:Python461712

• qichao1984/NCyc

  Language:Perl4644122

• xinehc/args_oap

  ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database

  Language:Python4336611

• clb21565/mobileOG-db

  code repo for mobileOG-db

  Language:Python322155

• wu-lab-uva/AMPHORA2

  An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.

  Language:Pep832568

• FlyPythons/KEGGTools

  A collection of tools to download and process KEGG database

  Language:Python31143

• caozhichongchong/arg_ranker

  Language:Python2721711

• HubertTang/PLASMe

  Language:Python251174

• minoh0201/MetaCompare

  MetaCompare

  Language:Python17485

• qhmu/QSDB

  Quorum sensing gene database for archaea and bacteria

  8202

• clb21565/kairos

  Language:Python5160

• bioone/ARGs-MGEs-MAP

  This is the source code for ARGs-MGEs-MAP

  Language:HTML1000

• luanxiao/AnHyDeg

  Database of anaerobic hydrocarbon degradation genes used for functional gene searching of metagenome data sets

  1000