luke-dt

luke-dt's Stars

• rclone/rclone

  "rsync for cloud storage" - Google Drive, S3, Dropbox, Backblaze B2, One Drive, Swift, Hubic, Wasabi, Google Cloud Storage, Azure Blob, Azure Files, Yandex Files

  Language:Go47.8k5695.5k4.3k

• rxhanson/Rectangle

  Move and resize windows on macOS with keyboard shortcuts and snap areas

  Language:Swift26.2k97655792

• James-Yu/LaTeX-Workshop

  Boost LaTeX typesetting efficiency with preview, compile, autocomplete, colorize, and more.

  Language:TypeScript10.8k563.1k535

• cxli233/FriendsDontLetFriends

  Friends don't let friends make certain types of data visualization - What are they and why are they bad.

  Language:R6.5k1197253

• pop-os/shell

  Pop!_OS Shell

  Language:TypeScript4.9k691.2k269

• spack/spack

  A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

  Language:Python4.5k998.6k2.3k

• yhat/ggpy

  ggplot port for python

  Language:Python3.7k125467572

• clauswilke/dataviz

  A book covering the fundamentals of data visualization

  Language:HTML3.2k113100700

• macmade/Hot

  Hot is macOS menu bar application that displays the CPU speed limit due to thermal issues.

  Language:Swift2.5k269695

• mikolmogorov/Flye

  De novo assembler for single molecule sequencing reads using repeat graphs

  Language:C79730701169

• oschwengers/bakta

  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

  Language:Python4621424857

• nanoporetech/medaka

  Sequence correction provided by ONT Research

  Language:Python4304851476

• Ecogenomics/CheckM

  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

  Language:Python3511438073

• ncbi/amr

  AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

  Language:C++2802912441

• gtonkinhill/panaroo

  An updated pipeline for pangenome investigation

  Language:Python2721227633

• kevinsblake/NatParksPalettes

  Color palette package inspired by National Parks

  Language:R236245

• tseemann/shovill

  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

  Language:Perl2151717445

• rrwick/Deepbinner

  a signal-level demultiplexer for Oxford Nanopore reads

  Language:Python12494023

• oschwengers/platon

  Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

  Language:Python11164215

• DiltheyLab/MetaMaps

  Long-read metagenomic analysis

  Language:Perl10067623

• CSB5/OPERA-MS

  OPERA-MS - Hybrid Metagenomic Assembler

  Language:C++92148917

• thanhleviet/ISfinder-sequences

  Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biotoul.fr/)

  628615

• tmplshdw/cloud_config_workaround

  Script to keep different local graphics/display settings for games that sync them with Steam cloud

  Language:Shell6153212

• jonathancrabtree/Circleator

  Flexible circular visualization of genome-associated data with BioPerl and SVG.

  Language:Perl475428

• bowman-lab/diffnets

  Self-supervised neural nets to understand protein mutations

  Language:Python384311

• donia-lab/MetaBGC

  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome

  Language:Python326188

• jbloomlab/dms_tools2

  software for the analysis and visualization of deep mutational scanning data

  Language:Python32183320