marcodelapierre
Nextflow nerd, data enthusiast, STEM educator, computational scientist (PhD) 🏳️🌈
@seqeralabsPerth, Noongar Boodja, Australia
Pinned Repositories
md-dockerfiles
My Dockerfiles
md-nextflow-pipelines
Meta-repository: collection of my Nextflow pipelines
nanopore-nf
Nanopore pipeline for DPIRD - uses Nextflow
quantum-play
Early experiments with various Quantum Computing frameworks
toy-acacia-nf
Toy pipeline to test Nextflow with Acacia (S3 Object Storage) at Pawsey
trinity-nf
Trinity assembly pipeline for BioCommons / USydney Informatics Hub - Nextflow porting
pawsey-containers
A collection of Dockerfiles and Singularity deffiles for Pawsey-supported images
pawsey-spack-config
Automated deployment system for the scientific software stack in use at Pawsey
singularity-containers
Webinars&Tutorial on Containers on HPC and Cloud with Singularity
singularity-hpc
Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.
marcodelapierre's Repositories
marcodelapierre/quantum-play
Early experiments with various Quantum Computing frameworks
marcodelapierre/toy-acacia-nf
Toy pipeline to test Nextflow with Acacia (S3 Object Storage) at Pawsey
marcodelapierre/md-nextflow-pipelines
Meta-repository: collection of my Nextflow pipelines
marcodelapierre/toy-cowsay-nf
Toy pipeline for simple Nextflow tests
marcodelapierre/activememory
A page to test short term memory.
marcodelapierre/continuumio-docker-images
Repository of Docker images created by Anaconda
marcodelapierre/GPars
The GPars concurrency and parallelism framework for the JVM
marcodelapierre/hello-nf
Classic hello world script in Nextflow language
marcodelapierre/hpc-middleware-scripts
Scripts to install middleware for HPC
marcodelapierre/learn-github-workflows
A practice repository for me to learn the basics of GitHub Workflows
marcodelapierre/libseqera
Library for Java & Groovy modules shared across Seqera projects
marcodelapierre/micromamba-docker
Rapid builds of small Conda-based containers using micromamba.
marcodelapierre/nextflow
A DSL for data-driven computational pipelines
marcodelapierre/nf-core-configs
Config files used to define parameters specific to compute environments at different Institutions
marcodelapierre/nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
marcodelapierre/nf-stresswave
Nextflow pipeline to stress Wave service
marcodelapierre/platform-installer
Seqera Platform installer scripts
marcodelapierre/Quantum_Benchmarking
Codes used for benchmarking open-source quantum simulation packages.
marcodelapierre/rnaseq-nf
A proof of concept of RNAseq pipeline
marcodelapierre/seqera-conda-recipes
Conda recipes for the Eel project
marcodelapierre/seqera-homebrew-tap
Homebrew Tap of Seqera products and tools
marcodelapierre/seqera-kit
Python implementation for automated pipeline launching through Tower CLI (beta)
marcodelapierre/shpc-registry
Testing a remote registry for Singularity Registry HPC
marcodelapierre/singularity
SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.
marcodelapierre/singularity-hpc
Local filesystem registry for Singularity containers (intended for HPC) using LMOD. Works for users and admins.
marcodelapierre/spack
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
marcodelapierre/tower-cli
Nextflow Tower CLI tool
marcodelapierre/toy-quantum-qb-nf
Toy pipeline to run Quantum Computing simulations using Qristal by Quantum Brilliance
marcodelapierre/wave
On-demand containers provisioning service
marcodelapierre/wave-cli
Command line tool for Wave containers provisioning service