marcodelapierre

Computational scientist (PhD), supercomputing specialist, educator, data enthusiast 🏳️‍🌈

@seqeralabsPerth, Noongar Boodja, Australia

Pinned Repositories

md-dockerfiles
My Dockerfiles
Language:Dockerfile1 2 11
md-nextflow-pipelines
Meta-repository: collection of my Nextflow pipelines
10
nanopore-nf
Nanopore pipeline for DPIRD - uses Nextflow
Language:Nextflow23
quantum-play
Early experiments with various Quantum Computing frameworks
Language:Jupyter Notebook2 1 02
toy-acacia-nf
Toy pipeline to test Nextflow with Acacia (S3 Object Storage) at Pawsey
Language:Nextflow2 1 00
trinity-nf
Trinity assembly pipeline for BioCommons / USydney Informatics Hub - Nextflow porting
Language:Nextflow30
pawsey-containers
A collection of Dockerfiles and Singularity deffiles for Pawsey-supported images
Language:C++14 11 011
pawsey-spack-config
Automated deployment system for the scientific software stack in use at Pawsey
Language:Python2 11 148
singularity-containers
Webinars&Tutorial on Containers on HPC and Cloud with Singularity
Language:Python26 12 17
singularity-hpc
Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.
Language:Python107 7 14824

marcodelapierre's Repositories

marcodelapierre/trinity-nf
Trinity assembly pipeline for BioCommons / USydney Informatics Hub - Nextflow porting
Language:Nextflow30
marcodelapierre/argonmd
ArgonMD: a toy MD code
Language:C++00
marcodelapierre/data-intensive-workflows
Workshop on data-intensive workflows at Data Science Week 2019
Language:Jupyter Notebook0 1 00
marcodelapierre/biocommons-doc_guidelines
A set of guidelines for documenting bioinformatics tools and workflows
0 0
marcodelapierre/biocommons-how-to-guides
Language:SCSS0 0
marcodelapierre/biocommons-Nextflow_DSL2_template
Template for creating Nextflow DSL2 pipelines
Language:Nextflow0 0
marcodelapierre/CRYSTALpytools
This repository contains functions to be used with CRYSTAL.
marcodelapierre/ExaMiniMD
Molecular dynamics proxy application based on Kokkos
marcodelapierre/hpc-dummies
Small codes for HPC testing
Language:C++2 0
marcodelapierre/InfinityHub-CI
marcodelapierre/Intro2HPC
Language:Python
marcodelapierre/isc-tutorial
ISC 2021 -- Getting Started with Containers on HPC
Language:C++
marcodelapierre/kubernetes-pilot
Kubernetes pilot deployments during HPCNow! course in February 2020
Language:Shell
marcodelapierre/lammps
Public development project of the LAMMPS MD software package
Language:C++0 0
marcodelapierre/maali-cygnet
Build files for maali
Language:Roff2 0
marcodelapierre/miniMD
MiniMD Molecular Dynamics Mini-App
marcodelapierre/pawsey-containers
A collection of Dockerfiles for Pawsey-supported images
Language:C++1 0
marcodelapierre/pawsey-spack-config
Configuration files for Spack at Pawsey
Language:Python
marcodelapierre/pawseysc.github.io
Pawsey Github landing page
Language:JavaScript1 0
marcodelapierre/plumed2
Development version of plumed 2
marcodelapierre/qhack_2023_coding_challenges
marcodelapierre/shpc-registry-cache
A cache of commands (currently for biocontainers)
Language:Jupyter Notebook
marcodelapierre/spack-configs
Share Spack configuration files with other HPC sites
Language:Python
marcodelapierre/streamflow
StreamFlow Workflow Manager
marcodelapierre/supercomputing-user-training
Code materials for Pawsey Supercomputing User Training
Language:HTML0 0
marcodelapierre/tower-agent
Agent app that allows connecting remote batch schedulers to Tower Cloud
marcodelapierre/toy-amd-rng
Toy repo to test the AMD RNG library
Language:C1
marcodelapierre/toy-gpu-nf
Toy pipeline to test Nextflow with Nvidia GPUs on Topaz at Pawsey
Language:Shell
marcodelapierre/toy-shpc-nf
Toy RNAseq pipeline, to test interplay of Nextflow with SHPC container modules
Language:Nextflow1
marcodelapierre/vscode-language-nextflow
Nextflow language support for Visual Studio Editor