Pinned Repositories
SigProfilerAssignment
Assignment of known mutational signatures to individual samples and individual somatic mutations
SigProfilerAssignmentR
R wrapper for utilizing the SigProfilerAssignment framework
SigProfilerExtractor
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
SigProfilerExtractorR
An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
bimm143_S23
Spring 2023 BIMM143 class website
BIMM143_SP23
Spring 2023 BIMM 143 course website
five-dollar-genome-analysis-pipeline
Workflows used for germline short variant discovery in WGS data
gatk4-somatic-snvs-indels
Workflows for somatic short variant discovery with GATK4
marcos-diazg.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
musica
MuSiCa - Mutational Signatures in Cancer
marcos-diazg's Repositories
marcos-diazg/musica
MuSiCa - Mutational Signatures in Cancer
marcos-diazg/bimm143_S23
Spring 2023 BIMM143 class website
marcos-diazg/BIMM143_SP23
Spring 2023 BIMM 143 course website
marcos-diazg/five-dollar-genome-analysis-pipeline
Workflows used for germline short variant discovery in WGS data
marcos-diazg/gatk4-somatic-snvs-indels
Workflows for somatic short variant discovery with GATK4
marcos-diazg/marcos-diazg.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
marcos-diazg/Misc-PCAWG7-code
Miscellaneous code from https://www.nature.com/articles/s41586-020-1943-3
marcos-diazg/PythonSeries
marcos-diazg/SigProfilerMatrixGenerator
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
marcos-diazg/SigProfilerMatrixGeneratorR
R wrapper for utilizing the SigProfilerMatrixGenerator framework
marcos-diazg/utils.mdg
Miscellaneous code used in different projects