mariakondili

mariakondili's Stars

• spotify/luigi

  Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

  Language:Python18k4711k2.4k

• janishar/mit-deep-learning-book-pdf

  MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville

  Language:Java13k410182.7k

• the-turing-way/the-turing-way

  Host repository for The Turing Way: a how to guide for reproducible data science

  Language:TeX1.9k631.3k662

• alexdobin/STAR

  RNA-seq aligner

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• chapmanb/bcbb

  Incubator for useful bioinformatics code, primarily in Python and R

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• hbctraining/In-depth-NGS-Data-Analysis-Course

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• ncbi/datasets

  NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

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• Xinglab/rmats-turbo

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• nf-core/scrnaseq

  A single-cell RNAseq pipeline for 10X genomics data

  Language:Nextflow217136175173

• weberlab-hhu/Helixer

  Using Deep Learning to predict gene annotations

  Language:Python1731313229

• bli25/RSEM_tutorial

  A short tutorial on how to use RSEM

  134131546

• GenomiqueENS/toulligQC

  A post sequencing QC tool for Oxford Nanopore sequencers

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• IBM/aspera-cli

  IBM Aspera CLI

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• ebecht/MCPcounter

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• GenomiqueENS/eoulsan

  A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)

  Language:Java5215910

• PyLadiesBerlin/resources

  Slides and exercises from talks

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• canceromics/MeRIPseqPipe

  MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.

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• gagneurlab/FRASER-analysis

  Accompanying analysis code for the FRASER manuscript

  Language:R26487

• ELTEbioinformatics/mulea

  mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate

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• soumelis-lab/ICELLNET

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• krother/talks

  Presentations

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• 123anjuan/HMA

  Human Muscle Ageing Cell Atlas

  Language:R15124

• ddhb/Workflow_of_ChIPSeq

  R code in workflow of chip-seq analysis

  Language:R11129

• NIEHS/orio

  Online Resource for Integrative Omics- command-line tools

  Language:Python5410

• egirard1/trainings_deprecated

  List of available online trainings

  40

• ScienceParkMadrid/SinglePointRNA

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• machinist/LM

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• BIMSBbioinfo/MyoExplorer

  Companion code for: Kim et. al., Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells

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• IDMDataHub/FlexOfficeReservationStreamlitApp

  Flask application to manage Flex Office reservations

  Language:Python10

• lumc-sasc/pub-PABPN1_APA-shift_Raz

  Language:Python1300