matanhofree

bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

Bioconductor_RCy3_the_new_RCytoscape

Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST

cb_sniffer

mutation(barcode) caller for 10x single cell data

crc-immune-hubs

Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organized multicellular immune hubs in human colorectal cancer"

isc-early-infection-response

Computational methods used in our study of early isc response to Salmonella infection

lungTumorEvolution

Algorithms and code developed as part of the study described in Marjanovic et al.

matanhofree.github.io

MatlabStan

Matlab interface to Stan, a package for Bayesian inference

mro-docker

Docker image for Microsoft R Open

scde

R package for analyzing single-cell RNA-seq data

matanhofree/crc-immune-hubs

Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organized multicellular immune hubs in human colorectal cancer"

matanhofree/lungTumorEvolution

Algorithms and code developed as part of the study described in Marjanovic et al.

matanhofree/isc-early-infection-response

Computational methods used in our study of early isc response to Salmonella infection

matanhofree/scde

R package for analyzing single-cell RNA-seq data

matanhofree/bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

matanhofree/Bioconductor_RCy3_the_new_RCytoscape

Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST

matanhofree/cb_sniffer

mutation(barcode) caller for 10x single cell data

matanhofree/matanhofree.github.io

matanhofree/MatlabStan

Matlab interface to Stan, a package for Bayesian inference

matanhofree/mro-docker

Docker image for Microsoft R Open

matanhofree/salmon

Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

matanhofree/SeqLib

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

matanhofree/vyaasa

Here is the demo