matanhofree

matanhofree's Stars

• cytoscape/cytoscape.js

  Graph theory (network) library for visualisation and analysis

  Language:JavaScript10.1k2252.8k1.6k

• prasmussen/gdrive

  Google Drive CLI Client

  Language:Go9k2225941.2k

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.8k883.3k634

• samoshkin/tmux-config

  Tmux configuration, that supercharges your tmux to build cozy and cool terminal environment

  Language:Shell2.2k4245501

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.9k852.1k506

• piermorel/gramm

  Gramm is a complete data visualization toolbox for Matlab. It provides an easy to use and high-level interface to produce publication-quality plots of complex data with varied statistical visualizations. Gramm is inspired by R's ggplot2 library.

  Language:HTML78758117222

• deweylab/RSEM

  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

  Language:C++42122197118

• ssadedin/bpipe

  Bpipe - a tool for running and managing bioinformatics pipelines

  Language:Groovy2321825757

• Genentech/scimilarity

  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

  Language:Python12911151

• th507/screen-resolution-switcher

  A simple command line screen resolution & dark-mode switcher written in Swift.

  Language:Swift1065412

• raphael-group/hotnet2

  HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network

  Language:Python100191943

• stevecheckoway/ucsddissertation

  LaTeX class file for writing dissertations at UC San Diego

  Language:TeX969354

• brian-lau/MatlabStan

  Matlab interface to Stan, a package for Bayesian inference

  Language:MATLAB81185947

• smallk/smallk

  High-performance Non-negative Matrix Factorizations (NMF) - Python/C++

  Language:C++4913614

• broadinstitute/single_cell_portal

  Tutorials, workflows, and convenience scripts for Single Cell Portal

  Language:HTML48195825

• klarman-cell-observatory/scCloud

  scCloud workflows

  Language:wdl5672