matsen/pplacer

Issues

• Build breaks: Error: This expression has type Lexing.lexbuf

  #375 opened 2 years ago by yurivict
  1

• rppr reroot failure

  #381 opened 10 months ago by lpipes
  4

• Uncaught exception: Simple_json.Undefined_key("n_cats")

  #376 opened 2 years ago by yifeng-evo
  1

• Fatal error: exception Failure("Tax table broken: tax_id 1 had established parent 117570 but 117571 is claiming to be the parent.")

  #380 opened a year ago by lpipes
  0

• Uncaught exception: Failure("please specify a tree model with -s or -c")

  #379 opened a year ago by CaroleBelliardo
  0

• updating ocaml-mcl to latest mcl version

  #378 opened 2 years ago by micans
  0

• issues with compilation

  #377 opened 2 years ago by kbipinkumar
  3

• binary for Mac OS X?

  #350 opened 8 years ago by jbloom
  4

• Pplacer using tree from Fasttree

  #374 opened 3 years ago by PaulaCat
  0

• Documentation link broken

  #365 opened 6 years ago by geboro
  2

• Conda support

  #351 opened 8 years ago by p1nox
  2

• more RAM will be required when use more CPUs?

  #369 opened 5 years ago by SilentGene
  1

• better error message for `bad suffix`

  #372 opened 4 years ago by AlessioMilanese
  0

• Where can I find GPL-3 version of guppy and rppr

  #371 opened 4 years ago by tillea
  1

• pplacer binary for macosx Mojave?

  #367 opened 6 years ago by jbholm
  2

• Erro while running pplacer with gtdbtk

  #370 opened 5 years ago by hites77
  1

• difficulty in installing

  #368 opened 5 years ago by mstambou
  1

• Is it difficult to remove the OCaml <= 4.01 requirement?

  #354 opened 8 years ago by wwood
  4

• Compilation error

  #359 opened 8 years ago by cmzmasek
  2

• errors with guppy toc and large trees

  #366 opened 6 years ago by antgonza
  4

• unable to use pplacer in Windows environment

  #363 opened 7 years ago by asmagaret
  1

• Stack overflow error

  #330 opened 7 years ago by crosenth
  7

• Edges and taxonomy

  #362 opened 7 years ago by galud27
  0

• pplacer - using multiple threads? - guppy

  #361 opened 7 years ago by AjitPS
  1

• pplacer 1.1.alpha19 or 1.1.alpha17 - BioConda - guppy - RaXML 8

  #360 opened 7 years ago by AjitPS
  7

• Cannot run pplace with CheckM

  #355 opened 8 years ago by itiago
  1

• 0

  #356 opened 8 years ago by itiago
  0

• Reference/query alignment question

  #353 opened 8 years ago
  1

• Show identity in the CSV file

  #352 opened 8 years ago by matsen
  1

• Handling of ambiguous amino acids

  #346 opened 8 years ago by donovan-h-parks
  8

• CSV flag not working?

  #347 opened 8 years ago by matsen
  1

• Problems during installation

  #349 opened 9 years ago by Lily-WL
  4

• Problems during installation

  #348 opened 9 years ago by Lily-WL
  3

• script for dereplication with swarm

  #343 opened 9 years ago by nhoffman
  0

• reference to Archaeopteryx web site is defunct

  #341 opened 9 years ago by cswarth
  0

• improve convexify documentation

  #345 opened 9 years ago by matsen
  0

• feature suggestion: weights for reference sequences

  #342 opened 9 years ago by nhoffman
  0

• "malformed row in jplace" after pplacer warning "computed function value is infinite or NaN"

  #340 opened 10 years ago by nhoffman
  6

• Classification failure

  #339 opened 10 years ago by matsen
  0

• pplacer --groups stalls in phylosift

  #338 opened 10 years ago by nmb85
  0

• merging with guppy

  #335 opened 11 years ago by Jangus2111
  2

• classif_table.py undercounts read tallies after reduplication

  #334 opened 11 years ago by nhoffman
  0

• loss of specificity in 318-placement-specific-mask branch

  #328 opened 11 years ago by nhoffman
  1

• guppy classify (hybrid2) should ignore sequences not in jplace

  #327 opened 11 years ago by nhoffman
  3

• Invalid number when parsing JSON ouput

  #331 opened 11 years ago by gjospin
  11

• by_taxa output of classif_table.py should be ordered by freq/tally

  #329 opened 11 years ago by metasoarous
  1

• Feature request: create directory specified by 'guppy lpca --out-dir' if it doesn't already exist

  #326 opened 11 years ago by nhoffman
  0

• file compression support for deduplicate_sequences.py

  #324 opened 11 years ago by nhoffman
  1

• batteries.2.0.0 installation fails

  #320 opened 11 years ago by nhoffman
  3

• Specifying --write-pre-masked shouldn't prevent placement

  #319 opened 11 years ago by metasoarous
  5