maurya-anand
Bioinformatics Programmer with professional experience in the development of next-generation sequencing (NGS) tools, pipelines, databases, and web applications.
Oxford
maurya-anand's Stars
AykutSarac/jsoncrack.com
✨ Innovative and open-source visualization application that transforms various data formats, such as JSON, YAML, XML, CSV and more, into interactive graphs.
faridrashidi/kaggle-solutions
🏅 Collection of Kaggle Solutions and Ideas 🏅
hadley/r4ds
R for data science: a book
trinib/Linux-Bash-Commands
:godmode: Ultimate list of Linux bash commands, cheatsheets and resources
nextflow-io/nextflow
A DSL for data-driven computational pipelines
ruanyf/simple-bash-scripts
A collection of simple Bash scripts
griffithlab/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
remotion-dev/github-unwrapped-2022
Your coding year in review #GitHubUnwrapped
openwdl/wdl
Workflow Description Language - Specification and Implementations
igvteam/igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
chanzuckerberg/miniwdl
Workflow Description Language developer tools & local runner
openwdl/learn-wdl
Educational materials for learning WDL
igvteam/igv-webapp
IGV Web App
griffithlab/rnabio.org
website for the rnaseq course
BU-ISCIII/iskylims
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
broadinstitute/viral-pipelines
viral-ngs: complete pipelines
guyduche/Blast2Bam
Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
SystemsGenetics/GEMmaker
A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction
ImperialCardioGenetics/frequencyFilter
Allele frequency filtering for Mendelian variant discovery
foerstner-lab/Lab_Knowledge_Base
A small collection of useful tutorials and links
snakemake-workflows/dna-seq-neoantigen-prediction
Snakemake workflow for neoantigen prediction
pbfrandsen/insect_genome_assemblies
scripts used to download and analyze insect assemblies from GenBank
BU-ISCIII/nextflow-scif
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
tobsecret/BADAS_Nextflow_Tutorial
Nextflow tutorial for the BADAS series at NYU Center for Genomics and Systems Biology
BU-ISCIII/qc_exome_tools
gencorefacility/nf-workflows
Repository of NextFlow Workflows
larsson-lab/SEISMIC
SEISMIC identifies genomic regions where mutations are positively selected in cancer genomes, by analysing the distribution of mutations across the cohort.
BU-ISCIII/exome_pipeline
Miscellaneous pipelines for genomics computation analysis in a SGE HPC platform.
BU-ISCIII/markdowns
repository with the markdowns of all of our analyses.
BU-ISCIII/miRNAs-nf
Nextflow pipeline to analyze miRNA-seq data.