MDI Biological Laboratory
The MDI Biological Laboratory is a rapidly growing, independent nonprofit biomedical research institution. Its mission is to improve human health and well-being
Pinned Repositories
biocore_automated-pca
A collection of bash and R scripts intended to automate principle components analysis
DataVisualizationApp
IDEA
Repo for Integrated Differential Expression Analyzer
mdibl_cloud_control
one-factor_deseq2
Repository for working with our DEseq2 R script
package_downloads
A repository to create automations that download and Install external bioinformatics packages.
svaseq
Collection of SVASeq R scripts for the REGENE14 and REGENE15 datasets
UGGS
Repo for Unusual Gene Group Selector python project
workflows_in_the_cloud
Workflows in the Cloud
zebrafish_embyo_2018
MDI Biological Laboratory's Repositories
mdibl/workflows_in_the_cloud
Workflows in the Cloud
mdibl/zebrafish_embyo_2018
mdibl/IDEA
Repo for Integrated Differential Expression Analyzer
mdibl/package_downloads
A repository to create automations that download and Install external bioinformatics packages.
mdibl/axobase
mdibl/biocore_analysis
A root directory for Biocore pipeline analysis
mdibl/biocore_automated-pca
A collection of bash and R scripts intended to automate principle components analysis
mdibl/biocore_documentation
Central repo for all non-project-specific documentation. Includes biocore best practices and guidelines.
mdibl/biocore_misc
A repository to store miscellaneous scripts and programs used for different admin purposes
mdibl/cwl_development
a test repository to explore re-organizing and re-structing biocore_analysis
mdibl/data_downloads
A repository to create automations that download external datasets
mdibl/DataVisualizationApp
mdibl/ERCCNormalization
Experimenting with ERCC spike in normalization
mdibl/flask_app
mdibl/flask_server
mdibl/george_murray
contains practice exercises
mdibl/kristophN
mdibl/mdibl_cloud_control
mdibl/one-factor_deseq2
Repository for working with our DEseq2 R script
mdibl/rna_seq_pipeline_param
modified cwl workflows for parameter tweaking
mdibl/svaseq
Collection of SVASeq R scripts for the REGENE14 and REGENE15 datasets
mdibl/TransPi
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
mdibl/tximport_R
Repo for tximport R script and accompanying JSON config file
mdibl/UGGS
Repo for Unusual Gene Group Selector python project
mdibl/AlejandroTest
mdibl/andreaT
mdibl/biocore_projects
Repo to contain analysis/json/config/metadata files and descriptions
mdibl/biocore_utils
Resources for RNA-SEQ pipeline analysis
mdibl/NathanProjects
mdibl/pipeline_prep