mdlakic

mdlakic's Stars

• HarisIqbal88/PlotNeuralNet

  Latex code for making neural networks diagrams

  Language:TeX22.2k2271222.9k

• KindXiaoming/pykan

  Kolmogorov Arnold Networks

  Language:Jupyter Notebook15.1k1124121.4k

• Blealtan/efficient-kan

  An efficient pure-PyTorch implementation of Kolmogorov-Arnold Network (KAN).

  Language:Python4.1k3640360

• cgzirim/seek-tune

  An implementation of Shazam's song recognition algorithm.

  Language:Go1.9k147117

• sb-ai-lab/LightAutoML

  Fast and customizable framework for automatic ML model creation (AutoML)

  Language:Python1.2k216055

• 8080labs/ppscore

  Predictive Power Score (PPS) in Python

  Language:Python1.1k2762167

• abhishekkrthakur/autoxgb

  XGBoost + Optuna

  Language:Python680182489

• paulgavrikov/visualkeras

  Visualkeras is a Python package to help visualize Keras (either standalone or included in TensorFlow) neural network architectures. It allows easy styling to fit most needs. This module supports layered style architecture generation which is great for CNNs (Convolutional Neural Networks), and a graph style architecture, which works great for most models including plain feed-forward networks.

  Language:Python58664769

• 3dem/relion

  Image-processing software for cryo-electron microscopy

  Language:C++456501.1k203

• ZiyaoLi/fast-kan

  FastKAN: Very Fast Implementation of Kolmogorov-Arnold Networks (KAN)

  Language:Jupyter Notebook36721448

• rmzelle/ref-extractor

  Reference Extractor - Extract Zotero/Mendeley references from Microsoft Word files

  Language:JavaScript332102920

• martinpacesa/BindCraft

  User friendly and accurate binder design pipeline

  Language:Python308119463

• flatironinstitute/deepblast

  Neural Networks for Protein Sequence Alignment

  Language:Python11468521

• eead-csic-compbio/get_homologues

  GET_HOMOLOGUES: a versatile software package for pan-genome analysis

  Language:Perl1101711726

• kylemcdonald/CloudToGrid

  Example of converting a 2d point cloud to a 2d grid via the assignment problem.

  Language:Jupyter Notebook965112

• shuyana/DiffusionProteinLigand

  Language:Python773611

• matsen/pplacer

  Phylogenetic placement and downstream analysis

  Language:OCaml751331518

• Gaius-Augustus/Tiberius

  deep learning gene finder

  Language:Python38763

• Juke34/awesome-awesomeness-bioinformatics

  A curated list of awesome curated lists of awesome softwares and resources in bioinformatics and affiliated areas

  37102

• microsoft/peft_proteomics

  LoRA for protein language models

  Language:Jupyter Notebook27312

• RSchmirler/data-repo_plm-finetune-eval

  Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"

  Language:Jupyter Notebook23332

• JKoblitz/bacdive-api

  Language:Python17243

• LKremer/MSA_trimmer

  Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.

  Language:Python17202

• scikit-bio/scikit-bio-tutorials

  Interactive tutorials for using scikit-bio in biological research

  Language:Jupyter Notebook17308

• bmcfee/RasterFairy

  The purpose of Raster Fairy is to transform any kind of 2D point cloud into a regular raster whilst trying to preserve the neighborhood relations that were present in the original cloud. A typical use case is if you have a similarity clustering of images and want to show the images in a regular table structure.

  Language:Python13306

• padlocbio/padloc-db

  HMMs and system models used by PADLOC

  72119

• EABogdanova/ProBAN

  Language:Jupyter Notebook321

• iponamareva/ProtCNNSim

  Method for finding protein family similarity

  Language:Jupyter Notebook2100

• mdmparis/Estimating_gender_bias_in_references

  Language:Jupyter Notebook2300

• rizatemizel/Building-a-best-performing-model-for-tabular-data-sets

  Language:Jupyter Notebook210