Pinned Repositories
iSAFE
Pinpoints the mutation favored by selection
bioconda-recipes
Conda recipes for the bioconda channel.
adVNTR
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
bioconda-recipes
Conda recipes for the bioconda channel.
java-modules
VNTR-eQTL
Scripts for analyzing VNTR-eQTLs in GTEx cohort
AmpliconArchitect
AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more regions of interest. Please "watch" this repository for improvements in runtime, accuracy and annotations for GRCh38 human reference genome coming up soon.
mehrdadbakhtiari's Repositories
mehrdadbakhtiari/adVNTR
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
mehrdadbakhtiari/VNTR-eQTL
Scripts for analyzing VNTR-eQTLs in GTEx cohort
mehrdadbakhtiari/bioconda-recipes
Conda recipes for the bioconda channel.
mehrdadbakhtiari/java-modules