metagenome-atlas/atlas

Issues

• WorkflowError: Failed to obtain job status.

  #646 opened a year ago
  5

• Error in rule get_read_stats and run_decontamination during run qc

  #645 opened 2 years ago
  4

• median_coverage.h5 ERROR

  #640 opened 2 years ago
  4

• Error in rule apply_quality_filter

  #635 opened 2 years ago
  1

• atlas init cannot find template_config.yaml

  #634 opened 2 years ago
  2

• Error in rule DRAM_destill

  #631 opened 2 years ago
  4

• Error in rule concat_annotations

  #630 opened a year ago
  3

• Error in rule align_reads_to_final_contigs

  #628 opened 2 years ago
  16

• Error in rule download_gtdb

  #627 opened 2 years ago
  1

• Error in rule run_gunc

  #626 opened 2 years ago
  3

• dRep issue - DataFrame.pivot

  #625 opened 2 years ago
  2

• Error in rule metabat

  #618 opened 2 years ago
  11

• Overview of the files in the genomes/counts folder.

  #617 opened 2 years ago
  2

• finding unmapped reads

  #616 opened 2 years ago
  5

• Error in rule run_spades

  #614 opened 2 years ago
  2

• gtdbtk classify: error: one of the arguments --skip_ani_screen --mash_db is required

  #612 opened 2 years ago
  3

• Error in rule get_read_stats & rule run_decontamination

  #610 opened 2 years ago
  1

• Error with reports

  #609 opened 2 years ago
  2

• Use optimal translation tables for gene prediction

  #608 opened 2 years ago
  2

• Atlas 2.13 installation problem

  #605 opened 2 years ago
  2

• Error in rule run spades metatranscriptomes

  #603 opened 2 years ago
  0

• Run aborted with error

  #601 opened 2 years ago
  3

• Mapping statistics from pileup file is not reliable

  #600 opened 2 years ago
  2

• Unable to install Atlas 2.9

  #597 opened 2 years ago
  3

• KO abundances

  #594 opened 2 years ago
  0

• sortmeRNA for rRNA removal from metatranscriptomes

  #593 opened 2 years ago
  2

• Error in rule root_tree and rule DRAM_set_db_loc

  #592 opened 2 years ago
  2

• Error in rule build_bin_report

  #591 opened 2 years ago
  8

• Error in rule root_tree

  #590 opened 2 years ago
  1

• Error in rule semibin_predict_taxonomy: file exists, GTDB

  #588 opened 2 years ago
  6

• Connda connection errors

  #587 opened 2 years ago
  4

• Error with atlas v2.13

  #586 opened 2 years ago
  3

• Error in atlas run assembly --ri: Couldn't resolve host name

  #585 opened 2 years ago
  1

• Error in rule

  #584 opened 2 years ago
  4

• run_decontamination crash

  #583 opened 2 years ago
  4

• Store CRAM files

  #581 opened 2 years ago
  2

• List all installed tools and their licenses

  #575 opened 2 years ago
  1

• I installed the latest version of atlas and found this error when I run "atlas run qc"

  #574 opened 2 years ago
  8

• Error in rule

  #572 opened 2 years ago
  2

• Galah gieves weird results!

  #570 opened 2 years ago
  0

• Dependency conflict while installing ATLAS 2.12.0

  #567 opened 2 years ago
  4

• Error in rule combine_contig_stats

  #565 opened 2 years ago
  8

• Error in rule

  #563 opened 2 years ago
  3

• Error_gtdb, dram_download

  #562 opened 2 years ago
  5

• Exiting because a job execution failed.

  #561 opened 2 years ago
  3

• sbatch submission error with slurm

  #560 opened 2 years ago
  4

• Can this function be realized for atlas?

  #559 opened 2 years ago
  5

• Expecting value: line 1 column 1 (char 0)

  #550 opened 2 years ago
  1

• atlas ,how to not bin?

  #549 opened 2 years ago
  15

• Can this atlas analyze human metagenome?

  #548 opened 2 years ago
  5