meyer-lab/tfac-ccle

Issues

• Size vs. components for Tucker decomposition

  #254 opened 2 years ago
  1

• Outline the figures for the integration of datasets

  #250 opened 2 years ago
  0

• are the measurements in CycIF for cytoplasm or nucleus overlap in staining method?

  #249 opened 2 years ago
  0

• Reorganization and using xarray consistently

  #248 opened 2 years ago
  0

• Figure 3 sketch

  #185 opened 2 years ago
  0

• Figure 2 sketch

  #184 opened 2 years ago
  3

• Figure 1 sketch

  #183 opened 2 years ago
  0

• Checking the scale of the cytokine data

  #153 opened 4 years ago
  0

• Flip partial Tucker components?

  #147 opened 4 years ago
  0

• Obtain processed methylation data

  #146 opened 4 years ago
  11

• Explore PARAFAC2 for broader molecular profiling

  #145 opened 3 years ago
  3

• Move initial analysis plots into figure building code

  #144 opened 4 years ago
  0

• Try gene set enrichment analysis on gene components

  #143 opened 3 years ago
  1

• Remove log-transformed cytokines

  #140 opened 4 years ago
  2

• See if multi-start solves the AUC vs. component # jitter

  #139 opened 4 years ago
  5

• Try l1 regularization of the logistic regression model

  #138 opened 4 years ago
  0

• Evaluate the predictions using a paired analysis

  #137 opened 4 years ago
  5

• Line plots for partial tucker

  #134 opened 4 years ago
  2

• Try different arrangement for treatments in LINCS

  #108 opened 4 years ago
  0

• Explore results from CP decomposition

  #107 opened 4 years ago
  0

• Polish CP decomposition

  #106 opened 4 years ago
  0

• Tucker decomposition

  #105 opened 4 years ago
  0

• Documentation

  #97 opened 4 years ago
  0

• Import UCLA/Duke MRSA study for PARAFAC2

  #94 opened 4 years ago
  0

• LINCS data

  #73 opened 4 years ago
  4

• OLS

  #68 opened 4 years ago
  0

• Organize Synapse Data

  #37 opened 4 years ago
  0

• Journal Requirements

  #36 opened 4 years ago
  0

• XGBOOST/Regression

  #35 opened 4 years ago
  0

• Workflow Function

  #34 opened 4 years ago
  0

• Tensor Factorization Implementation

  #33 opened 4 years ago
  0

• Cleaning Up The Repository

  #15 opened 5 years ago
  0

• Move over figure generating code

  #10 opened 5 years ago
  0

• Cut dataset if # of missing values surpasses threshold

  #9 opened 4 years ago
  0

• Cut dataset by common genes and cell lines

  #8 opened 5 years ago
  1

• Pushing Data back to Synapse

  #7 opened 5 years ago
  1