Pinned Repositories
cwl-airflow
Python package to extend Airflow functionality with CWL1.1 support
sc-seq-analysis
CWL toolkit for single-cell sequencing data analysis
workflows
Community maintained workflows & tools (with examples)
airflow-guides
Guides to get up and running with Airflow
altanalyze3
altanalyze3_data
Test data for altanalyze3
Anchor
ansible-cwl
Deploy various implementations of CWL
circos
Build circos plots
altanalyze3
AltAnalyze version 3 is a Python3 library to integrate and compare diverse RNA isoform datasets.
michael-kotliar's Repositories
michael-kotliar/circos
Build circos plots
michael-kotliar/Anchor
michael-kotliar/ansible-cwl
Deploy various implementations of CWL
michael-kotliar/APEC
Single cell epigenomic clustering based on accessibility pattern
michael-kotliar/area
Temporary repository
michael-kotliar/bioinformatic-workflows
CWL workflows for bioinformatic analysis
michael-kotliar/biowardrobe-airflow-analysis
BioWardrobe's backend rewritten for Apache Airflow.
michael-kotliar/biowardrobe-migration
Set of tools for migration from BioWardrobe to BioWardrobe-NG
michael-kotliar/command-line-tools
Experimental repository to include only tested command line tools
michael-kotliar/command-line-tools-data
Data to run conformance tests from command-line-tools repository
michael-kotliar/custom-executor
Custom executor for Rabix Composer
michael-kotliar/cwl-airflow-parser
Package to extend Airflow functionality with CWL v1.0 support
michael-kotliar/cwl-airflow-tester
Tester for cwl-airflow-parser
michael-kotliar/cwl-airflow-workflows
Demo workflows for cwl-airflow
michael-kotliar/cwl-ts
Typescript data model for Common Workflow Language
michael-kotliar/cwl-workflows
Experimental repository to use tools from command-line-tools as a submodule
michael-kotliar/docker-airflow
Docker Apache Airflow
michael-kotliar/janggu
Deep learning infrastructure for bioinformatics
michael-kotliar/janis
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
michael-kotliar/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
michael-kotliar/MSPC
Using combined evidence from replicates to evaluate ChIP-seq peaks
michael-kotliar/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
michael-kotliar/python-patterns
Source code behind the python-patterns.guide site by Brandon Rhodes
michael-kotliar/rapids-single-cell-examples
Examples of single-cell genomic analysis accelerated with RAPIDS
michael-kotliar/reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
michael-kotliar/RELI
Regulatory Element Locus Intersection (RELI) Analysis
michael-kotliar/scripts
Set of helpful scripts
michael-kotliar/scRNAseq_Benchmark
Bench-marking classification tools for scRNA-seq data
michael-kotliar/single_cell_portal
Tutorials, workflows, and convenience scripts for Single Cell Portal
michael-kotliar/tig-stack
TIG stack (Telegraf/InfluxDB/Grafana) wrapped in docker