mskcc/LimsRest

Issues

• enhancement: add second timestamp to getWESSampleData as an upper bound

  #331 opened 2 years ago by anoronh4
  0

• possible bug in getOncotreeTumorType

  #326 opened 2 years ago by anoronh4
  0

• Compare rowIndex and newIgoId

  #282 opened 3 years ago by apatruno618
  0

• Add SourceSampleId to the dna, rna and library reports

  #279 opened 3 years ago by apatruno618
  0

• return rowIndex and TransactionId

  #285 opened 3 years ago by apatruno618
  0

• Add 'cDNA Library' to this list

  #278 opened 3 years ago by apatruno618
  1

• Only update picklist with assays where !hideFromUser

  #277 opened 3 years ago by apatruno618
  1

• EXPAND team is ready for ddpcr datatype entries to overwrite picklist values

  #274 opened 3 years ago by apatruno618
  0

• Remove this as parsing is done in Sequencing Requirement plugin

  #260 opened 3 years ago by apatruno618
  0

• Remove this util since mapping is done in Sequencing Requirement plugin

  #261 opened 3 years ago by apatruno618
  0

• Review & remove logic that has been moved to Sequencing Requirement plugin

  #262 opened 3 years ago by apatruno618
  0

• Do not default run type to PE100 as this logic will live in the Sequencing Requirement plugin

  #258 opened 3 years ago by apatruno618
  0

• Remove as logic has been moved to Sequencing Requirement plugin

  #259 opened 3 years ago by apatruno618
  0

• Feature request: way to retrieve delivery date for a request

  #107 opened 3 years ago by allanbolipata
  0

• Upgrade the build to latest https://gradle.org/

  #269 opened 3 years ago by dmcmanam
  0

• Alt-Ids intended to be unique per sample may repeat

  #96 opened 5 years ago by dmcmanam
  1

• Refactor CMO Sample ID generation to ensure all Normal Samples have "N"

  #162 opened 3 years ago by CbourqueMSK
  1

• Do not override requested reads if sample type equals 'pooled libraries'

  #248 opened 3 years ago by apatruno618
  2

• Request-Tracker: Complete request marks all samples complete (f or b?)

  #253 opened 3 years ago by DavidStreid
  0

• internal server error for getSampleManifest

  #245 opened 3 years ago by anoronh4
  1

• Not all fastq.gz files returned for these IGO IDs

  #232 opened 4 years ago by dmcmanam
  0

• feature request: search lims by fastq

  #227 opened 4 years ago by anoronh4
  1

• fastqs missing from `/igo/delivery`

  #228 opened 4 years ago by anoronh4
  1

• 10570_C is igoComplete=True but no fastq paths

  #200 opened 4 years ago by anoronh4
  3

• UpdateLimsSampleLevelSequencingQcTask: Difficult to determine cause of Server Error

  #198 opened 4 years ago by DavidStreid
  0

• 07833_B_1 missing cmoPatientId, cmoSampleName in most recent endpoint query

  #166 opened 4 years ago by allanbolipata
  2

• 07250_BN is missing fastqs

  #172 opened 4 years ago by anoronh4
  1

• 05257_CL_3 fastqs found in endpoint do not exist

  #164 opened 4 years ago by allanbolipata
  2

• Feature request: Way to query endpoints by date/time to see records with that has been updated since

  #167 opened 4 years ago by allanbolipata
  1

• Increment CMO Sample ID in plugin to resolve duplicate Names

  #105 opened 4 years ago by dmcmanam
  0

• Add Tube ID to pipeline endpoints

  #158 opened 4 years ago by dmcmanam
  0

• Generate CMO IDs for IMPACT 505 Projects

  #159 opened 4 years ago by dmcmanam
  0

• IMPACT505 samples has picard_baits or null baitSet

  #154 opened 4 years ago by allanbolipata
  1

• 08039_BZ_8 tissueLocation field contains value with newline character

  #137 opened 4 years ago by allanbolipata
  4

• feature request: show bcl2fastq summary statistics in lims

  #149 opened 4 years ago by anoronh4
  1

• 09687_AA_15 not showing fastqs in LIMS endpoint

  #141 opened 4 years ago by dmcmanam
  1

• 07951_L_1 possibly missing fq pair in lims

  #131 opened 4 years ago by anoronh4
  3

• Sample 05428_O_2 has 3 passed pairs of fastqs on 2 runs

  #102 opened 4 years ago by dmcmanam
  2

• Some samples return Internal Server Error after endpoints query

  #116 opened 4 years ago by allanbolipata
  2

• 07951_L_1 fastq lanes are incorrect

  #118 opened 4 years ago by dmcmanam
  1

• Some WES samples from request 06938_J are not returning R2 or R1 fastqs

  #113 opened 4 years ago by allanbolipata
  1

• Samples with self-referencial sample.SourceLimsId fail to return

  #108 opened 4 years ago by dmcmanam
  1

• 09259_H_55 missing bait set

  #106 opened 4 years ago by anoronh4
  2

• 09367_K_1 has two different libraries with different metadata but the same fastqs

  #104 opened 4 years ago by dmcmanam
  1

• Cell line patient derived sample should have patient CMO id

  #73 opened 5 years ago by imprezka88
  1

• CMOSampleClass "Tumor" is an old alias for "Unknown Tumor"

  #69 opened 5 years ago by ckandoth
  4

• External specimen not recognized when creating sample set

  #68 opened 5 years ago by imprezka88
  4