mwalker174

mwalker174's Stars

• broadinstitute/gatk

  Official code repository for GATK versions 4 and up

  Language:Java1.7k1534.6k594

• broadinstitute/picard

  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Language:Java984156806369

• samtools/htslib

  C library for high-throughput sequencing data formats

  Language:C81462717446

• broadinstitute/gatk-sv

  A structural variation pipeline for short-read sequencing

  Language:Python1721423471

• zeeev/wham

  Structural variant detection and association testing

  Language:C++103194725

• broadinstitute/cromshell

  CLI for interacting with Cromwell servers

  Language:Python532911515

• DecodeGenetics/svimmer

  Structural variant merging tool

  Language:Python468109

• talkowski-lab/svtk

  Language:Python35232612

• broadinstitute/cromwell-tools

  A collection of Python clients and accessory scripts for interacting with the Cromwell

  Language:Python2235399

• broadinstitute/cromwell-task-monitor-bq

  Scalable reporting of Cromwell task call resource monitoring data to BigQuery

  Language:Go9812

• broadinstitute/homebrew-dsp

  A brew tap for tools and formula that DSP uses that aren't ready for publishing to homebrew-core

  Language:Ruby4910

• broadinstitute/lrma-cloud-utils

  A python library for interacting with GCS, Cromwell, and Terra

  Language:Python45161