nanoporetech/dorado

Issues

• Resume from question.

  #1143 opened 25 days ago
  1

• Modification tags and re-calling

  #1142 opened 20 days ago
  1

• Model downloaded cannot be used

  #1141 opened 19 days ago
  2

• Is it possible to perform demux while basecalling?

  #1140 opened 20 days ago
  9

• minimap2 parameters removal in v0.8.0

  #1139 opened 25 days ago
  3

• Multiple GPU support for dorado?

  #1138 opened a month ago
  2

• memory (RAM) usage for dorado correct

  #1137 opened a month ago
  2

• Using spot instances to reduce compute costs

  #1136 opened a month ago
  2

• Q: No supported chemistry found for <..>

  #1135 opened a month ago
  9

• whether reads sequence of basecaller out bam contains polya sequence?

  #1134 opened a month ago
  2

• Aligner: Create a merged file when using folder as input

  #1133 opened a month ago
  2

• dorado run time- super high accuracy, promethION

  #1132 opened a month ago
  6

• Bases are emitted from strided blocks within polyA region (SQK-RNA004)

  #1131 opened a month ago
  3

• How to check the modification model version

  #1130 opened a month ago
  5

• cuDNN error: CUDNN_STATUS_NOT_INITIALIZED when I run methylation calling

  #1129 opened a month ago
  1

• Dorado cannot find GPU

  #1128 opened a month ago
  7

• Issue with --estimate-poly-a

  #1127 opened a month ago
  6

• Methylation calling v5.0.0_5mCG_5hmCG@v2 model output non-CpG results

  #1126 opened a month ago
  6

• Question about `--estimate-poly-a` and Adapter Removal in DRS Basecalling

  #1125 opened a month ago
  4

• Dorado demux unexplained unclassified read

  #1124 opened a month ago
  14

• 'XM' tag not found by grep. (call from pod5)

  #1123 opened a month ago
  1

• m5C and inosine base-calling models argument not found

  #1122 opened a month ago
  2

• SUP Modification Basecalling Model Architecture

  #1121 opened a month ago
  1

• modified basecalling analysis for m6a modification of RNA

  #1120 opened a month ago
  2

• Recommended max_barcode_penalty for a given barcode length

  #1119 opened a month ago
  5

• Question on CpG Island-Specific Methylation Analysis Using Dorado

  #1117 opened a month ago
  2

• Automated Model Selection for Fast5 File to FastQ File

  #1116 opened a month ago
  1

• Duplex from pre-basecalled BAM

  #1115 opened a month ago
  4

• Log command output failed

  #1114 opened a month ago
  2

• dorado basecaller: model dna_r10.4.1_e8.2_400bps_hac@v5.0.0 slower than dna_r10.4.1_e8.2_400bps_sup@v5.0.0

  #1113 opened a month ago
  3

• Dorado correct running very slowly when merging different runs

  #1112 opened 2 months ago
  3

• Dorado Demultiplexing Inconsistency

  #1111 opened a month ago
  3

• Quality score differences when running dorado on the Gridion vs on a linux server

  #1110 opened 2 months ago
  3

• Why was 260 bps deprecated?

  #1109 opened a month ago
  8

• estimate polyA doesn't find tails well with custom primer

  #1108 opened 2 months ago
  3

• Methylation tag (MM:Z) broken when there are no methylated cytosines called for dna_r10.4.1_e8.2_400bps_hac@v5.0.0 basecalling model

  #1107 opened 2 months ago
  1

• correct from-paf does a little chunk then stops

  #1106 opened 2 months ago
  1

• Request CpG methylation detection command

  #1105 opened 2 months ago
  2

• Where to get `2021-05-17_dna_r9.4.1_minion_96_29d8704b` model

  #1104 opened a month ago
  2

• Dorado 'sup' RAM overflow on Windows, only with large pod5 files (weird bug)

  #1103 opened 2 months ago
  2

• alignment with "dorado basecaller" command

  #1102 opened a month ago
  2

• Significant decrease in demux yield going from dorado-v0.5.1 to dorado v >= 0.7.3

  #1101 opened 2 months ago
  3

• The lowest GPU memory required for dorado correct？

  #1100 opened 2 months ago
  3

• dorado: "-o" is now ambiguous: refers to both output directory and "overlap"

  #1099 opened 2 months ago
  1

• Dorado 0.8.2 crashes when calling methylation

  #1098 opened a month ago
  7

• Can Dorado move the Adaptor designed by us with known sequence

  #1097 opened a month ago
  3

• No supported chemistry found for flowcell_code:'_UNKNOWN_FLOWCELL_'

  #1096 opened 2 months ago
  2

• Automatic model selection fails for R10.4

  #1095 opened a month ago
  1

• Request to make run name in output files from dorado demux an option

  #1094 opened 2 months ago
  2

• Output File Location Issues - Not sure if it reported the results.

  #1093 opened 2 months ago
  2