nanoporetech/ont-assembly-polish

Issues

• Using pipeline for polishing of ONT transcriptomic data (from cDNA sequencing) with short Illumina reads

  #27 opened 4 years ago by MartinTes
  2

• Unable to find image 'ont-assembly-polish:latest' locally

  #26 opened 4 years ago by okazakib
  1

• Execution with conda

  #25 opened 4 years ago by SuseAgu
  0

• [ERROR] failed to open file './assembly-polish/canu-assembly/canu.contigs.fasta' make: *** [assembly-polish/racon.contigs.fasta] Error 1

  #19 opened 6 years ago by pneumowidow
  4

• request for test data and results

  #24 opened 5 years ago by GodloveD
  3

• big genome ?

  #23 opened 5 years ago by colindaven
  2

• Feature Request: Conda installation

  #22 opened 6 years ago by jolespin
  1

• [ERROR] /bin/sh: 1: cmake: not found

  #20 opened 6 years ago by fabiodepa
  1

• Need to externalize config.mk outside the container

  #15 opened 6 years ago by rusalkaguy
  2

• *** No rule to make target 'modules'. Stop.

  #18 opened 6 years ago by TseWue
  3

• racon output

  #17 opened 6 years ago by fanhuan
  1

• Run without docker

  #16 opened 6 years ago by BertBog
  1

• interested by the commands used to evaluate accuracy

  #12 opened 6 years ago by splaisan
  1

• Shotgun library

  #13 opened 6 years ago by lalalagartija
  0

• Shotgun library

  #14 opened 7 years ago by lalalagartija
  0

• Difficulty building from Docker

  #11 opened 7 years ago by jussher
  13

• Applying this on Pacbio sequencing methodology ?

  #9 opened 7 years ago by mortunco
  1

• canu error: Can't locate canu/Defaults.pm

  #10 opened 7 years ago by mortunco
  1

• Samtools sort -o flag missing

  #8 opened 7 years ago by eyalbenda
  1

• make: *** [build] Error 128, fatal: unable to access 'https://git.oxfordnanolabs.local/bsipos/ont-assembly-polish.git/': Could not resolve host: git.oxfordnanolabs.local

  #7 opened 7 years ago by johnsolk
  2

• settings for multiple rounds of CANU error correction

  #6 opened 8 years ago by michieitel
  1

• docker image fails with git clone of ont-assembly-polish

  #5 opened 8 years ago by biobenkj
  1

• Can only run one instance of the pipeline at a time

  #4 opened 8 years ago by ericenns
  1

• samtools problem

  #3 opened 8 years ago by gaworj
  1

• time saving

  #1 opened 8 years ago by wzylin
  1

• samtools sort

  #2 opened 8 years ago by tomsauv
  2