ncbi/magicblast

Issues

• No README file for the installation from source

  #61 opened 5 months ago by mkazanov
  1

• Are binaries for MAC ARM silicon available?

  #60 opened 5 months ago by mkazanov
  1

• truncated file error

  #59 opened 7 months ago by jeremysutherland
  4

• Error to install requirements.txt

  #58 opened 7 months ago by Completex
  2

• missing scaffold names on sam header

  #57 opened 10 months ago by cst-rmrz
  2

• magicblast can't parse the header of database

  #56 opened a year ago by Rinoahu
  2

• Mistakes on small introns

  #54 opened 2 years ago by sunriseTM
  3

• Error while running magicblast

  #52 opened 2 years ago by pablomics-star
  1

• Write down read qual from the `fastq` input into the `sam` output file?

  #32 opened 2 years ago by y9c
  4

• Filtering MagicBLAST Ouput to get Unmapped Pairs

  #43 opened 2 years ago by bioinfoMMS
  10

• Use magicblast to map an experiment in the SRA reporitory

  #50 opened 2 years ago by sabina-llr
  12

• Use NCBI SRA repository ( NCBI Magic-BLAST RNA-seq mapping tool)

  #49 opened 2 years ago by joseailtoncruz
  9

• Magicblast do not deal with short reads correctly.

  #31 opened 2 years ago by y9c
  13

• Distant homology searches

  #48 opened 2 years ago by manu-script
  2

• Can not produce spliced alignments of whole transcript

  #47 opened 2 years ago by LalitNM
  4

• Update version in Bioconda

  #33 opened 4 years ago by manu-script
  3

• Meaningful MAPQ values would be excellent.

  #39 opened 3 years ago by JohnUrban
  4

• Splice alignment for prokaryotes genome

  #25 opened 4 years ago by StephenLi55
  1

• Feature request: output .fna file of reads (not) matching the database

  #14 opened 4 years ago by colinbrislawn
  3

• problems with really short exons (10-6 bp)

  #15 opened 5 years ago by HegedusB
  4

• using magicblast to map transcriptome to genome

  #19 opened 4 years ago by 000generic
  3

• fasta header handling, non-canonical splice site detection, strand information coding

  #16 opened 4 years ago by HegedusB
  3

• magicblast against nt database

  #24 opened 4 years ago by yeroslaviz
  1

• request fo .gz inputs (fastq.gz especially)

  #23 opened 4 years ago by FTouzain
  2

• -fr and -rf flags for strand specific RNA-seq

  #21 opened 5 years ago by asethi-1
  3

• taking longer and using more memory than expected

  #12 opened 5 years ago by jdmontenegro
  2

• Confusion of output

  #11 opened 5 years ago by Edison2021
  2

• Weird behavior of magicblast: read from the reference can not be aligned to the same reference genome

  #8 opened 5 years ago by xie186
  11

• Include citation information

  #1 opened 7 years ago by Benjamin-Lee
  2