nf-core/hlatyping

Aggregate results from multiple samples

gurpreet-bioinfo opened this issue · 4 comments

gurpreet-bioinfo commented

Hi there,

Is there any possibility to aggregate results from multiple samples of hlatyping output similar to what one gets as MultiQC report from rnaseq pipeline? Only software versions and workflow
summary appear in MultiQC of hlatyping and no information about the analysis.

Off course, one can combine the tsv files from each folder (for each sample), but a way for comparative visualization would be great.

Thanks.
Gurpreet

apeltzer commented

It would be possible to create some custom content for MultiQC and add this to the pipeline - Pull Requests / Feature implementations are always welcome here at nf-core :-)

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apeltzer commented

(e.g. the nf-core/rnaseq pipeline does something similar like this with the biotypes stuff...)

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gurpreet-bioinfo commented

@apeltzer Thanks for the pointers.
So far I managed by creating ggplot from multiple samples, but would look into custom content too. :-)

apeltzer commented

Closing in favour of #105