nikvan

nikvan's Stars

• CopilotKit/CopilotKit

  React UI + elegant infrastructure for AI Copilots, in-app AI agents, AI chatbots, and AI-powered Textareas 🪁

  Language:TypeScript15.3k942352.2k

• posit-dev/positron

  Positron, a next-generation data science IDE

  Language:TypeScript3k343.3k92

• cBioPortal/cbioportal

  cBioPortal for Cancer Genomics

  Language:Java700556.2k575

• r-lib/rig

  The R Installation Manager

  Language:Rust6911021423

• daattali/timevis

  📅 Create interactive timeline visualizations in R

  Language:R66737133155

• ncbi/GeneGPT

  Code and data for GeneGPT.

  Language:Python38819633

• mskcc/vcf2maf

  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

  Language:Perl37979320219

• const-ae/ggupset

  Combination matrix axis for 'ggplot2' to create 'UpSet' plots

  Language:R35473725

• immunomind/immunarch

  🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

  Language:R3131430565

• mamba-org/quetz

  The Open-Source Server for Conda Packages

  Language:Python2952019279

• gpertea/gffcompare

  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF

  Language:C++208149532

• thomasp85/shinyFiles

  A shiny extension for server side file access

  Language:JavaScript1981116048

• cBioPortal/datahub

  A centralized location for storing curated data from cBioPortal

  Language:HTML17827756121

• dnanexus-rnd/GLnexus

  Scalable gVCF merging and joint variant calling for population sequencing projects

  Language:C++1541514841

• bergant/rapiclient

  Dynamic Open API (Swagger) Client for R

  Language:R6771518

• Appsilon/shiny.worker

  Intra-session reactivity in Shiny

  Language:R612695

• jcheng5/r-sidebot

  Language:R461319

• clearmatics/qreacto

  Run standalone React components in your Quarto project!

  Language:Lua37691

• hypebright/shinyconf2024-shiny101

  Shiny 101: Modular App Blueprint workshop ✨

  Language:R312140

• signaturescience/pracpac

  Practical R Packaging with Docker

  Language:R306530

• awslabs/linter-rules-for-nextflow

  Linter rules for Nextflow DSL scripts

  Language:Groovy29841

• nmfs-fish-tools/nmfspalette

  :art: an R color palette for NOAA Fisheries official colors

  Language:CSS295127

• cBioPortal/datahub-study-curation-tools

  Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.

  Language:HTML1820514

• aws-samples/amazon-omics-webapp-integrations

  This project contains the webapp sample integrated with AWS HealthOmics, which allows users such as admin and bioinformaticians to operate Amazon Omics workflow easily and check the run command status with charts and tables.

  Language:Vue164101

• aws-solutions-library-samples/guidance-for-multi-modal-data-analysis-with-aws-health-and-ml-services

  An end-to-end framework for storing, integrating, and analyzing multimodal HCLS data on AWS, using AWS HealthOmics, AWS HealthLake, AWS HealthImaging, Amazon SageMaker, Amazon Athena, Amazon QuickSight, and Amazon S3.

  Language:Jupyter Notebook14934

• shenorrLabTRDF/TimeAx

  Multiple trajectory alignment of time-series data

  Language:R10101

• arsenij-ust/cbpManager

  Generate, manage and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics.

  Language:Python8261

• baasman/allegRo

  An API for the semantic graph database, AllegroGraph

  Language:R8310

• aws-solutions-library-samples/guidance-for-bioinformatics-workflow-development-using-devops-on-aws

  This Guidance demonstrates how to set up a continuous integration and continuous delivery (CI/CD) pipeline to automate the lifecycle of your bioinformatics workflows on AWS HealthOmics

  Language:TypeScript5911

• FrancisCrickInstitute/deep-imcyto

  Nextflow pipeline for IMC segmentation tasks.

  Language:Python34400