omarwagih/ggseqlogo

Issues

• Plotting the PFMs output from Seq2Logo with Kullback - Leibler

  #40 opened 2 months ago by wshen2
  0

• The `<scale>` argument of `guides()` cannot be `FALSE`. Use "none" instead as of ggplot2 3.3.4.

  #39 opened 3 months ago by rongxinzh
  0

• error in makePFM when using method='prob'

  #38 opened 6 months ago by dxl3742
  0

• Package was removed from CRAN

  #36 opened 8 months ago by aviezerl
  2

• RNA seq logo

  #37 opened 10 months ago by XqKang
  0

• exclude WT sequence from seqlogo results

  #35 opened a year ago by weipinghh
  0

• The vignette acts weirdly in RStudio

  #34 opened a year ago by pormr
  2

• Change numbers on the x-axis of logos

  #22 opened 3 years ago by maximus-sci
  3

• Deprecated feature from ggplot2 3.3.4 used in ggseqlogo

  #32 opened a year ago by Brochiert
  0

• sequence logo with phosphorylated amino acids

  #31 opened a year ago by ryoshunki
  3

• Glitch or Feature? Either methods do not represent the true distribution of an allele when gaps are involved

  #29 opened 2 years ago by moa4020
  3

• Error for single base plotting

  #30 opened 2 years ago by kaufm202
  0

• <scale>` argument of `guides()` cannot be `FALSE`. Use "none" instead as of ggplot2 3.3.4

  #28 opened 2 years ago by moa4020
  1

• Gaps

  #27 opened 2 years ago by PotapenkoEugene
  0

• Amino acid chemistry color scheme

  #26 opened 2 years ago by durrantmm
  0

• Error bars

  #25 opened 2 years ago by rioualen
  1

• The Character "U" i s missing for aa

  #24 opened 2 years ago by lwlive
  2

• GC percent correction

  #23 opened 3 years ago by ryuma-matsubara
  1

• Keep same nucleotide order across all positions ?

  #21 opened 3 years ago by rezenman
  0

• Logo Range

  #20 opened 3 years ago by haruosuz
  2

• add option to avoid using small sample correction?

  #19 opened 4 years ago by jayoung
  0

• Version of LGPL?

  #18 opened 4 years ago by smoe
  1

• different color schemes for different sites?

  #12 opened 5 years ago by jbloom
  2

• Using list of sequences vs. PWM to generate plot produces different bit heights

  #17 opened 4 years ago by sd46w
  2

• Height method

  #15 opened 5 years ago by adminshuang
  0

• Facet plots in `geom_logo` should follow ggplot2 conventions

  #14 opened 5 years ago by MattBrauer
  4

• Using different TSD lengths as facetting variable

  #11 opened 5 years ago by mobilegenome
  1

• Greek letters not supported

  #6 opened 5 years ago by aroelo
  1

• Custom x-scale - separate scale_x_logo from geom_logo?

  #8 opened 7 years ago by ewallace
  1

• Fixed stacking order

  #10 opened 7 years ago by mathieudupont
  2

• Implement EDLogo in ggseqlogo?

  #7 opened 7 years ago by ewallace
  0

• stack_with affects x axis tick positions

  #5 opened 7 years ago by pwwang
  0

• Top most letters plottet incorrectly if ylim is smaller than sum of position

  #4 opened 7 years ago by leonjessen
  1

• Small Sample Correction Not working

  #2 opened 7 years ago by jglavina
  1

• Sample data not working

  #3 opened 7 years ago by egenomics
  1

• Strange `custom` behaviour when dimensions are not matched.

  #1 opened 7 years ago by ivan-krukov
  1