oracle5th's Stars
AndriSignorell/DescTools
Tools for Descriptive Statistics and Exploratory Data Analysis
haotianteng/BoostNano
A segmentation toolkit for segment the Nanopore RNA signal.
huggingface/transformers
🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
zhyu-lab/bmvae
a variational autoencoder method for clustering single-cell mutation data
gregzanotti/dlsa-public
Deep Learning Statistical Arbitrage
lgreski/datasciencectacontent
repository for Community Mentor content related to the Johns Hopkins University Data Science Specialization on Coursera
QSong-github/scGCN
scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
srush/Tensor-Puzzles
Solve puzzles. Improve your pytorch.
nanoporetech/dorado
Oxford Nanopore's Basecaller
greenelab/lab-website-template
An easy-to-use, flexible website template for labs.
rrwick/GFA-dead-end-counter
a tool for counting dead ends in GFA assembly graphs
netbiolab/scHumanNet
Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
teunbrand/ggplot_tricks
Here, I collect some tricks I've learned about the {ggplot2} R package
yukiteruono/pbsim3
PBSIM3: a simulator for all types of PacBio and ONT long reads
evotools/nf-LO
A Nextflow workflow to generate lift over files for any pair of genomes
DataBiosphere/toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
ComparativeGenomicsToolkit/cactus
Official home of genome aligner based upon notion of Cactus graphs
multiz/multiz
DNA multiple sequence aligner, official version from Penn State's Miller Lab
katerinakazantseva/strainy
Graph-based assembly phasing
NVIDIA/DeepLearningExamples
State-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastructure.
daewoooo/SVbyEye
xolox/python-humanfriendly
Human friendly input/output for text interfaces using Python
pangenome/chm13-grch38-liftover
liftover from the CHM13 T2T assembly to GRCh38 using wfmash
agshumate/Liftoff
An accurate GFF3/GTF lift over pipeline
sortmerna/sortmerna
SortMeRNA: next-generation sequence filtering and alignment tool
JackieHanLab/TOSICA
Transformer for One-Stop Interpretable Cell-type Annotation
microbiome/course_2022_miaverse
mummer4/mummer
Mummer alignment tool
kharchenkolab/numbat
Haplotype-aware CNV analysis from single-cell RNA-seq
ewenharrison/finalfit
Quickly create elegant regression results tables and plots when modelling in R