paulayu's Stars
sikaozhe1997/Xin-Yue
岳昕:致北大师生与北大外国语学院的一封公开信
davidemms/OrthoFinder
Phylogenetic orthology inference for comparative genomics
smirarab/ASTRAL
Accurate Species TRee ALgorithm
ANGSD/angsd
Program for analysing NGS data.
aquaskyline/SOAPdenovo2
Next generation sequencing reads de novo assembler.
BGI-shenzhen/PopLDdecay
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
DReichLab/EIG
Eigen tools by Nick Patterson and Alkes Price lab
DReichLab/AdmixTools
Tools test whether admixture occurred and more
lh3/psmc
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
popgenmethods/smcpp
SMC++ infers population history from whole-genome sequence data.
nf-core/eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
chrishah/MITObim
MITObim - mitochondrial baiting and iterative mapping
sujaikumar/assemblage
Tools for working with second gen assemblies, fasta sequences, etc
ginolhac/mapDamage
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
yairf/SDS
R code to compute the Singleton Density Score (SDS)
priyamoorjani/DATES
Method for dating admixture in ancient DNA specimens
grenaud/schmutzi
Maximum a posteriori estimate of contamination for ancient samples
YuboZhangPKU/ERICA
tyjo/dystruct
Inference of population structure from time-series genotype data
antonisdim/haystac
Code repository for the HAYSTAC pipeline
nathan-nakatsuka/ContamLD
apeltzer/CircularMapper
A method to improve mappings on circular genomes, using the BWA mapper
juliayyan/PhylogeneticTrees.jl
poseidon-framework/poseidon-hs
A toolset to work with modular genotype databases in the Poseidon format
stschiff/exp_dat_reading_group_2021
Public Repository of our Fall 2021 Reading group on PCA, STRUCTURE and other means of low-dimensional representation of genetic data
svendvn/AdmixtureBayes
This repository is for developing a MCMC over admixture phylogenies
luolab/luolab.github.com
labpages